Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0218 ATGCTCGCATTCCGGCCATGCTTCTTCAACCCACCACTCTGCCGCCCCATTTCCGTTAAAGTTCTCTCCTTTTTCGCATTTCCTTCTTCTCACATTCTCTCTCTCCCTTTCCCCCATCGCACAATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTATGGAGCCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAGGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGAAGCAGTATCAGAAAGAGGGTGATTTGGGAAAAGTTGCCAAGGAGTGCCGTTCATCTCAGTCCATGATGCGGAAACCTGAGGCTCTGACTATTAGGAAAGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCTTTCCAGGATCTTACTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAAATGATGATTCTACATATGAACCTTCCAATCGGTCACACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCGCTAGATTTGGTACCTATAGCTGCATTCTACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCCATACTATCGATATGGAGATACAATGAAGATGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTGTCACTGTATCAGATATCTATGTACCTTAATGCCCCCAATGGACCTGACTCAGAAGATAAGATAAAATAA 2364 0.4492 MLAFRPCFFNPPLCRPISVKVLSFFAFPSSHILSLPFPHRTMTKPPSAFDALMSGARAAAAAAAKKKKSEQSQQPTVSSPKKRKPSSSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALDMISMEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIRALAEATGSTESKIKKQYQKEGDLGKVAKECRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLTTRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVGSSCEGLIIKTLNDDSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIAAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSQVIPGPKPYYRYGDTMKMPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVSLYQISMYLNAPNGPDSEDKIK* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0218 787 MobiDBLite consensus disorder prediction 60 140 - -
Amo13g0218 787 Gene3D - 147 415 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0218 787 PANTHER DNA LIGASE 1 65 768 - -
Amo13g0218 787 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 405 623 - -
Amo13g0218 787 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 153 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0218 787 Pfam DNA ligase N terminus 171 346 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo13g0218 787 Pfam ATP dependent DNA ligase domain 413 617 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo13g0218 787 Gene3D DNA ligase/mRNA capping enzyme 442 567 - -
Amo13g0218 787 CDD OBF_DNA_ligase_I 625 773 - -
Amo13g0218 787 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 229 766 IPR000977 GO:0003910|GO:0005524|GO:0071897
Amo13g0218 787 Pfam ATP dependent DNA ligase C terminal region 642 754 IPR012309 GO:0003910|GO:0006281|GO:0006310
Amo13g0218 787 ProSitePatterns ATP-dependent DNA ligase signature 2. 591 617 IPR016059 GO:0003909
Amo13g0218 787 Gene3D - 622 774 IPR012340 -
Amo13g0218 787 ProSiteProfiles ATP-dependent DNA ligase family profile. 519 655 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo13g0218 787 MobiDBLite consensus disorder prediction 67 103 - -
Amo13g0218 787 CDD Adenylation_DNA_ligase_I_Euk 402 620 - -
Amo13g0218 787 SUPERFAMILY Nucleic acid-binding proteins 625 765 IPR012340 -
Amo13g0218 787 Gene3D - 423 621 - -
Amo13g0218 787 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 437 445 IPR016059 GO:0003909
Amo13g0218 787 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 65 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0218 Amo-Chr13 3145195 3152085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0218 1 784 Core DNA Replication Machinery Family AT1G08130 61.606 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0218 K10747 - aip:107642653 1261.9