Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0209 ATGGCTAAAGATGTTGAAGTTGAAGAGCAGAGAGGAGGAGGAGGAGGAGAATACTCAGCAAAAGACTACCATGAACCACCACCAGCACCATTGATTGATGCAGAGGAGCTTACAAAGTGGTCCTTCTATAGAGCACTCATAGCTGAGTTTATAGCAACACTTTTATTCCTTTACATCACTGTGTTGACCATTATTGGTTATAGTAACCAAAGTGATACCACAATCAAGGGTAACACACAGTGTGATGGTGTTGGAATCTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGCATTTCGGGAGGACACATCAACCCTGCAGTTACATTTGGGTTGTTCCTTGGCCGGAAGGTGTCGCTGATAAGGGCACTGTTGTACATAGTGGCACAGTGTGCCGGCGCCATCTGCGGCACCGGACTGGCCAAGGGATTCCAAAAAGCTTACTTTGATAGGTATGGAGGTGGTGCCAACTACGTTCATCCTGGTTACAACAAAGGAACTGCTTTGGGTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGAAACGCCAGAGACTCCCATGTTCCTGTGTTGGCACCACTGCCAATTGGATTTGCGGTGTTCATGGTTCACTTGGCCACAATTCCGGTGACCGGCACCGGCATCAACCCGGCAAGAAGCTTCGGAGCTGCCGTGATTTACAACAAAGACAAAATCTGGGATGACCATTGGATATTCTGGGTTGGACCAATTCTTGGAGCTGCAGCGGCTGCAATCTACCATGAACACATTATTAAAGCATCTGCCATAAAAGCCCTTGGATCCTTCAGGAGCAACCACTAA 876 0.4783 MAKDVEVEEQRGGGGGEYSAKDYHEPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTIIGYSNQSDTTIKGNTQCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKGFQKAYFDRYGGGANYVHPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKDKIWDDHWIFWVGPILGAAAAAIYHEHIIKASAIKALGSFRSNH* 292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0209 291 CDD MIP 44 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g0209 291 Pfam Major intrinsic protein 36 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Amo13g0209 291 SUPERFAMILY Aquaporin-like 36 277 IPR023271 -
Amo13g0209 291 Gene3D Glycerol uptake facilitator protein. 29 291 IPR023271 -
Amo13g0209 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 290 IPR034294 -
Amo13g0209 291 PANTHER AQUAPORIN PIP2-7 1 290 - -
Amo13g0209 291 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g0209 291 TIGRFAM MIP: MIP family channel proteins 48 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo13g0209 Amo-Chr13 2628002 2630578 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0209 1 289 Major Intrinsic Protein MIP AT2G37170 77.163 9.29e-164 456
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0209 K09872 - gmx:100811119 508.834