Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0190 ATGGAGTTCTGGGGTGTTGAGGTTAAGCCAGGGGATTGCGTTAAAATAGAGGAGTTGGAAGTAGCTAATGCCTACATCCACATCTCTCAGGTTGCGCTGGGAGAGGCCTCAAAGAATGAGAAATCTAAGGAACCTGTGGTTGTCTACCTCAAAGTTGGAGTGCAAAAGCTTGTTTTGGGAACTTTGAACAGGGAGGAAATCCCCCAAATACCCTTGGATTTGGTTCTCGACCAAGGGGCTGAGCTTTCCCACACTTGCAAGAGTGCCAGTGTCTATTTCTGTGGATATAGGGCTGATCGTGATGAGGATGTACCTGGTGATTTTGGTTCTGATGACTATTCAGAGAGTGATGAGGAAGAGGCTGCATTGAATCTCAAAGATAATGGAAAAGTTGAAACCAAGTCTGAAAAGGTAAAGATTGCTGAACCAAAAAAGGATGTGAGTGGTGCCCCAGCAAAGAAAGTCAATGTTGCTGTTCCAAAGAAAGATGAAGAGGACGAGGACTCTGATGATGACGACGACGATGATGATGAGTCTGATGATGAGGATGAATCTGGAAGTGAGATGGATGCTGATAGTGATGAGGACGGGAGTGATGAAGATGAAGAGACACCTGTGAAGAAGGTCGACCAGGGCAAGAAGAGACCAAATGTGTCTGCAACAAAAACTCCAGTTCCTGCTGCTAAGAAAGCTAAGAATGTAACTCCTGAAAAGTCTGGTGGCAAGAAAATTGCACATGCACCAACCCCTCACCCCGTGAAGAAAGGTGGAAATCCGAACAGCGCAGGGAAGTTCCAGTCACCTAAAACTGGTTCACAGCAGCAGAAAAAGGGTGGAAAGAAGGGTGGTCGTTGA 855 0.462 MEFWGVEVKPGDCVKIEELEVANAYIHISQVALGEASKNEKSKEPVVVYLKVGVQKLVLGTLNREEIPQIPLDLVLDQGAELSHTCKSASVYFCGYRADRDEDVPGDFGSDDYSESDEEEAALNLKDNGKVETKSEKVKIAEPKKDVSGAPAKKVNVAVPKKDEEDEDSDDDDDDDDESDDEDESGSEMDADSDEDGSDEDEETPVKKVDQGKKRPNVSATKTPVPAAKKAKNVTPEKSGGKKIAHAPTPHPVKKGGNPNSAGKFQSPKTGSQQQKKGGKKGGR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0190 284 MobiDBLite consensus disorder prediction 119 149 - -
Amo13g0190 284 Gene3D Nucleoplasmin core domain 1 104 - -
Amo13g0190 284 MobiDBLite consensus disorder prediction 164 201 - -
Amo13g0190 284 Pfam Nucleoplasmin-like domain 3 96 IPR041232 -
Amo13g0190 284 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 278 - -
Amo13g0190 284 MobiDBLite consensus disorder prediction 260 277 - -
Amo13g0190 284 MobiDBLite consensus disorder prediction 103 284 - -
Amo13g0190 284 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0190 Amo-Chr13 2268240 2270599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0190 1 275 C2H2 Transcription Factor Family AT5G03740 33.904 1.23e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0190 - - gmx:547649 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0190 13 2268240 2270599 Amo13g0190 13 2268240 2270599 ECH
Amo18g0573 18 7673887 7676615 Amo13g0190 13 2268240 2270599 PCT
Amo13g0190 13 2268240 2270599 Amo18g0573 18 7673887 7676615 PCT