Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0181 ATGAATAACAGAGACAGTGAAACTTCAAACCCTATCGATGGCGGAACAAAGAAGCCCAAGGTGGTTGTTATTACGGGCCCCACCGCCTCCGGCAAGTCCAAGCTCGCCGTCGATCTGGCCTCACACTTTCCCATTGAAGTCATCAACGCCGACTCCATGCAAGTCTACTGTGGTCTCGACGTCCTCACCAACAAACTCCCTCTCTCCCAACACAAAGGTCCTCCCATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGAAACTTCCTTCTCTTTTCTGTTTTGTTTTAGGGGTGCCGCACCATCTCTTAGGTACCGTAAACCCAAACGTTGAATTTACAGCTAAAGTGTTTAGGGATTCTGCTATTCCGATCATAGATGAAATACTAGCTCGCAATCACTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCATTTCTCCTAGACGATTTGGCAGATTATATGAACGAAGGCTGTTATGGTGATCCATCTGGTGCCACATGGTCTGATACGAGTTTCCCCGCCAATAATGACAATTCAAGTAATGGTTATGACCTGCTTAAAGAGATCGATCCAGTTGCCGCAAATAGAATCCATCCAAATAACCATAGAAAGATCAATCAATATATTAATTTGTATTCACGTACTGGTGTTGTTCCTAGCAAAGTATTCCAAGGAAAAGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTGCTGGACAAATATGTTGAGCAGAGGGTAGACTGTATGTTGGATGCTGGATTACTCAATGAAGTCTATGATGTTTACAACGTGAATGCAGATTATACTAGAGGATTGCGGCAAGCCATTGGTGTCCGAGAATTTGAGCCACTTCTTAGAAGTTGCCTTGTTGAAGACATCTATAAAAGAGAGAAGGAACTGTTAAACGGTTCCAGAATAGAAAAGGGTTTGAAATTGTTTGATGGTAACCTGATGGAGTGGTTGAAATCTTCCTCTGATACTAATACCATAATTCTTTTAGAAGAAGCAATAGAAAAAGTGAAGGTTAATACCCGGAGACTTGTTCGACGACAGAAGAGGATGCTCAATAGACTGCAAACACTATTTGGTTGGAACATACATTTTGTTGATTCCACAGAGTCAATATCAAGCAAATCAGAGGATGTATGGACTGACCAAGTGGTTGAGTCAGCTACAAAGGTAGTTAGTTCCTTCTTGTGTGAGAATGGAAGCTTGTCATCTACTTGTGGCATGTCAAATGACACCAACGTGAAAATTAATCAAAGGGACCTCTGGACTCGATACATATGCAAGGCCTGTGGAGACAGGGTGCTAAGAGGATTACATGAATGGGAACAACACAAAAAGGGTCGTGGCCACAGGAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAAGTCTTGGTACCTTAGACAAAACGTTTGATTACTATGAATGCAAATAG 1521 0.4247 MNNRDSETSNPIDGGTKKPKVVVITGPTASGKSKLAVDLASHFPIEVINADSMQVYCGLDVLTNKLPLSQHKGPPILSLSLSLSLSLSLLKLPSLFCFVLGVPHHLLGTVNPNVEFTAKVFRDSAIPIIDEILARNHLPVIVGGTNYYIQALVSPFLLDDLADYMNEGCYGDPSGATWSDTSFPANNDNSSNGYDLLKEIDPVAANRIHPNNHRKINQYINLYSRTGVVPSKVFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDKYVEQRVDCMLDAGLLNEVYDVYNVNADYTRGLRQAIGVREFEPLLRSCLVEDIYKREKELLNGSRIEKGLKLFDGNLMEWLKSSSDTNTIILLEEAIEKVKVNTRRLVRRQKRMLNRLQTLFGWNIHFVDSTESISSKSEDVWTDQVVESATKVVSSFLCENGSLSSTCGMSNDTNVKINQRDLWTRYICKACGDRVLRGLHEWEQHKKGRGHRKRISSLKSKAQSLGTLDKTFDYYECK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0181 506 Hamap tRNA dimethylallyltransferase [miaA]. 21 422 IPR018022 GO:0008033
Amo13g0181 506 Gene3D Classic Zinc Finger 451 493 - -
Amo13g0181 506 Pfam IPP transferase 101 379 - -
Amo13g0181 506 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 101 428 - -
Amo13g0181 506 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 74 - -
Amo13g0181 506 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0181 506 Gene3D - 184 237 - -
Amo13g0181 506 Gene3D - 19 450 IPR027417 -
Amo13g0181 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 274 IPR027417 -
Amo13g0181 506 CDD NK 21 74 - -
Amo13g0181 506 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 101 428 IPR039657 -
Amo13g0181 506 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 74 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0181 Amo-Chr13 2199713 2203293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0181 10 488 C2H2 Transcription Factor Family AT2G27760 52.772 1.03e-165 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0181 K00791 - gmx:100792690 715.301