Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0176 ATGAGGACAGTGTACAGCAAGGATGGGAATCTCACAAATTTACGGTTTTGCCACTGTTCCCAAGTTCGCACCCTTACCCCAAAATCCTCATTCCTCGTTTCTCTCATTCAAGTTCCAAACTTTACCCTCTCCATCACAACAAAAACCTTTCCCTTTCGATCTTCCTCCATTCTCTGCGGAATCAACCGTCGATGTGTGAATAATAATTATCGTCGTTGGGTGATTCGAGCATCAATGGCATCTTCCACGTCATCCCCAACACAGAGAGAGCGATTCTCTGTGCTGTTTGTGTGCCTCGGCAACATATGCAGAAGCCCAGCTGCGGAAGGAGTATTCCAGGACTTGGTTAAGAAAAGGGGTCTCGATTCAAAGTTCAACATCGATTCTTGTGGCACCATCGATTATCACGAGGGGAATGAAGCGGATCCGAGGATGAGGGAAGCATCAAAGAAGCGTGGGATTCAGATAACTTCAATTTCGAGGCCGATCAAGCCATCTGATTTCGTTGATTTTGATCTTATTCTAGCCATGGACATGCAAAACAGAGAGGACATATTGGAGTCTTTCAATAGTTGGAGAGCCAGATATAAGTTACCAGATGATGCACATAAAAAGGTTAAGTTGATGTGCTCCTATTGTAAGAAGCATGATGAAAGTGAAGTCCCGGATCCTTATTATGGTGGACCGCAAGGGTTTGAGAAGGTATTAGATTTGCTTGAAGATGCTTGCGGATCATTGCTGGAAAATATTTTGGCTGAAAATGAACATGTACGACAATCCTAA 783 0.4381 MRTVYSKDGNLTNLRFCHCSQVRTLTPKSSFLVSLIQVPNFTLSITTKTFPFRSSSILCGINRRCVNNNYRRWVIRASMASSTSSPTQRERFSVLFVCLGNICRSPAAEGVFQDLVKKRGLDSKFNIDSCGTIDYHEGNEADPRMREASKKRGIQITSISRPIKPSDFVDFDLILAMDMQNREDILESFNSWRARYKLPDDAHKKVKLMCSYCKKHDESEVPDPYYGGPQGFEKVLDLLEDACGSLLENILAENEHVRQS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0176 260 PRINTS LMW phosphotyrosine protein phosphatase signature 94 111 IPR017867 GO:0004725|GO:0006470
Amo13g0176 260 PRINTS LMW phosphotyrosine protein phosphatase signature 137 153 IPR017867 GO:0004725|GO:0006470
Amo13g0176 260 PRINTS LMW phosphotyrosine protein phosphatase signature 221 236 IPR017867 GO:0004725|GO:0006470
Amo13g0176 260 SMART LMWPc_2 92 249 IPR023485 -
Amo13g0176 260 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 70 255 - -
Amo13g0176 260 Gene3D - 75 255 - -
Amo13g0176 260 CDD LMWPTP 93 248 - -
Amo13g0176 260 Pfam Low molecular weight phosphotyrosine protein phosphatase 94 247 IPR023485 -
Amo13g0176 260 SUPERFAMILY Phosphotyrosine protein phosphatases I 91 250 IPR036196 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0176 35 254 Protein tyrosine phosphatase (PTP) family AT3G44620 55.133 2.67e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0176 K25307 - gmx:100797254 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0176 13 2179121 2181414 Amo13g0176 13 2179121 2181414 ECH