Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0175 ATGAACGGCGATGCCCGGAGACGCGACCGGAGGGACAACCCCAGGAGGTCGAAGAAGCAGAAGCTGATTTGCAGTGCAGAGGAAGAACTTGAGGCCAGATTAGGGTTCGATCTCTTCTCTGAGGGCGAAAAGCGTCTTGGATGGTTGCTCAATTTTGCATCTTCTTCTTGTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGATCTTCCTTCAAGACTAAATACAGATTTCGTCCTTATTTCTACGCAGCTACAAAGAATAAAATGGAGATGGATGTTGAAGCATACCTGAGGCGCCGTTATGAAACTCAGATTGCAGACATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAATCATTTGTCTGGCTTAAGAAAACCTTATCTAAAGCTATCATTTGATACCGTGCAACAATTGATGACTGTAAAGAGTGACCTGATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTGACTGAAAGAAGAGAACAAAAACCACAGGACTTTATAGATTGCATAATTGATCTCCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGCTCTGGCCAGTGGTATGATGTTTGCGTGTCCAGTACTGGGGTTACACTTGAGAAGAGAACAGATCTTCTGCAGCGCGCCGAAGTTCGTGTTTGTGCATTTGACATTGAGACCACAAAACTTCCACTCAAATTTCCTGACGCTGACTATGATTTGATTATGATGATTTCATACATGGTAGATGGGCAAGGGTATTTAATCACAAATAGAGAGTGTGTTGGTGATGACATAGAGGATTTAGAGTACACTCCTAAACCAGAGTTTGAAGGCTGTTTTAAGGTTACAAATGTTCAAAATGAGATTGAACTTCTTAGATTATGGTTTTCTCACATGCAAGAGATGAAACCTGGTATTTATGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTTGAGAAAAGGGCAGAACATCATGGGTTCAAAATGAGTGAGGAATTGGGGTTTCAGTGTGACAAGAATCAAGGGGAATGTCGTGCTAAATATGCTTGTCATTTAGATTGTTTTGCTTGGGTTAAACGGGACAGTTATCTCCCTCAAGGAAGCCAAGGCCTAAAGGCGGTTACAAAAGCAAAGTTGGGTTATGATCCCTTGGAGGTGAACCCTGAGGATATGGTTTGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATCTCCTAACAAACACCAATCCGACCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGGTCTGATATTCCAACTAGTTTTACACTAGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCCATCATGGAAAAGCTTTCAAAATTACGAGATGTTCCAATACGTGAAGAATGCCCCCTCATTTATCATCTAGATGTAGCTGCTATGTATCCAAACATAATTTTGACAAATCGACTTCAGCCACCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATATAAAGAAACAGATTGAGTCCGATTTTGTTGATGGTTCTAACGTGAGGTTATCAAAATCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATCAAGGCTGAAAGACCGTTTAAAGAAATACTGCCAGAAGGCATACAAGCGTGTTCTTAACAAACCAGTTACAGAACTCCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGATAGAAGATATGAATATAAAGGTCTTAACAAGGTTTGGAAAGGAAAACTGTCAGAAGCCAAGGGGAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGACATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTTATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACAGGAGCAAAAATAATTCAGAATGCCCGGTTGCTGGTAGAAAAAATAGGGAAACCACTTGAACTAGATACTGATGGTATCTGGTGTGCACTTCCTGGGTCTTTTCCAGAAAATTTTACTTTTAAAACAAAAGATTCGAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTAAATGTTGATGTGGCAATCAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATAAGGAAAACATATACTACTCGTAGCGAATGCTCTATAGAATTTGAGGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAAGAAGAAGGAATTTTAATTAAAAAACGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGAAGAGGTGAACTGAAACTAATAAAAGTTTTCCAGGCTGAGCTATTTGACAAGTTTCTCCATGGCTCAACCTTAGATGAATGCTATTCAGCTGTTGCTGCTGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGGAAGGATATTACAGACAGTGAGTTGCTTGATTACATCTCAGAATCAAGTACCATGAGCAAGTCATTAGCTGATTATGGTGAGCAAAAATCTTGTGCTGTCACCACTGCCAAACGTCTTGCCGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACAAAAGCTGAAGTAATGAAGTACTATGTTCGAAGATGGTGCAAGGCCTCATCAGATGTTGGCATTCGGTCCATAGTTGACTGGTCCTACTACAAGCAGCGGCTTTCTTCAGCAATTCAAAAAATTGTCACAATTCCCGCTGCCATGCAAAAGATTGCAAATCCTGTTCCTCGGGTAGCTCATCCGGATTGGTTGCATAAGAAAGTTCGTGAAAAAGAGGACAAGTTTCGTCAACGAAAATTAGTTGATGTCTTTAACTCATTTAAAAGGGATGATCGCTCAAAAAGGAATAGTGATTCTAATGGTGTCAGCCTTATGGCTGATGAAGAGAATGTGATTGACTTGGAGGATTTTGGAAACAAGGCCAGGAATTTGCCAATTGGTCCTAGACCAATTATACGGCATTATAAAGCTAATAATGAAGGGAATTCAATTAAGCTCAGTGGTCATGGAAATTCTGAGCAACAACATATTGATAATAGCAGCAAGGACGAGTCACTTTCACTTTTTCAACAAAAGGAAATATCATCTGAAAATGTTGACAGAAATGTTGATTATCAAGGATGGCTTGAAATAAAAAAGAGAAAGTGGAAAAGTATCCTGGAAAAGAGAAAAAAGCGAAGATTGGAGAATTCAAAGAAAGCTGATAGGATGAATGGTGTTCCTGAACAAATGAATGGTACAACTGGTAGAACAAATGTCAGTTCATATTTTAGAACGAATGAAGTAGCCCTGAAGCGGTACCATTGGCAGATAATACAACTACTTCAGAGCTCACAGATTGGCCAATTTTTTGCCTGGGTAGTTGTTGATGGGATTATGCTTAAGATTCCTGTTTCGGTTCCTAGAGTCTTTTACCTCAACTCAAGATCACCAGTTACTGAAGAATTTCTTGGCAAAAGCGTCAAGAAGACACTTCCTCATGGAAAGCAAAGTTATAATCTGTATGAGGTTTCAATTGACGAAGTTCAATTTAAGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGATAAAAGTGCCAAACAAAGAAGTCTACAAGACTCATGGAATTTGAGTGAATTGCACATGAAGACCACAACCGAATGTTCTTATCTCGAACAATTGATATCCTTTTTTTACTTGTATCATAGTATCTCTGAGGGACGGGCTATATACGTTGGATATTTTCCAGCATCAAAATCAATAACAGTTGTGGTAGTTAATTCATATCAAAACAAGGATTTATCACTGGCTTATCTTGAAAGACAGTTTCACGATGCATGCCAAGCTTTGTCTATTCAGCCACCTCCCCGGAATAGCATTAGTTTTAAGGTGGACTATGTTTCACATGTCAAGGATGCTGAAACTTTGATGCAAAGAGCAATAAATGATCGCAGGAATGAATATCATGGACCTATGGTTGCTATCATCGAATGCCCAAATGTTCAACTTTTGAAATTGGGTATTCGATCTCTAGATGATTTTCCATGCCTGAGTATTCCTTGTAATGCCCGTGATAGTCAATATCAGATTCTTGGATGGCAACAAGTTGCTGGAAAAATTGGAATGCAACGTTGTGCTGCATCAGGCCAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTTGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGCGTGATAGTCAACAGGTACTTTGGATATCGGATGGCGGTCTTCCTGATTTAGGTGGCATTAATGATGAAGAGACCTGTTTTCTTGACGAGGTCCACCAACCTGTTCTTACATATCCTGGAGCTTACAGAAAAGTTACTGTTGAGTTAAAGATACACCACCTAGCTGTGGATGCCCTTTTAAAAAGCAACCAAGTCAATGAAATGGAAGGAGGCGCTTTATTAGGATTCGATAATGAATTTAATTCTGGAGCTAATCCCGCTATTGATCAGAGTGGCTTTGATGAGGCTGCCTCATGTACACATGCCTTTCGAGTCCTGAAACAATTGATTCAGCGGTGCCTTGCAGATGCAGTTACATCTCAAAACACATATGCGGATGCAATGTTGCAACATCTGTATCGATGGCTTTGCAGCCCTCAGTCAAAACTTCACGATCCAGCTCTTCACCAGCTACTTCACAAGGTCATGCAAAAAGTGTTTGCAATGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATCGACACAGGGAAATATGATCTTGCTGCAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAGTCTAGAGACTTATTTGAATGGATTGAGTTGGAACCACTTCAGTTTTGGCGGTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATCAGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAGTACTTGCCAAAGAAAATCCAGGATCATTTCATTGTCATTGTTTCTCAATTCTTGTATATTCCTTGGAGCTATGCACAAAAGCAAGCAGGAATCAGGGAATCAATGCTGAATGGTGATTCCTGCACCCCATCGATTAACATTGGAGCTGCAGAGGCTTTGGAATCAGAAATGATAGAATATATCAAAGAACAGATTAGCTCTTACTTCACGGACAATCTTTTGCGAATTGTTCGTGATATTGTTCTTCACATGAAAGGGGCAAGCAAATCAGAAGATGACCCAAGTACATCATCTGGCCTTCCTCAAATTGTGGGTGATCAACATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTCTGTGCTGTGTTGGCCCTCGACCAAAGTGTGCAGCATGATGTGTTGGTCATGAGAAAGAATTTGTTAAAATATGTTCGTGTTAGGGAGTTTGCTCCGGAAGCTGAGTTTCGTGATCCATGTCATTCCTTCATCCTATCCAATGTCATTTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGTGACTCGGCTTTATTGACTCAGGAGTGGCGTTGTGCGGTGCCACAGTGTGGGCAGCCTTATGACCGCGAGGTGATGGAGAATGCGCTTCTTCAGATCGTACGACAAAGAGAGCGGCTTTACCACCTTCAAGATCTGGTGTGCCTCAGGTGCAACCAGGTCAAAGCTGCACATTTGTCTGAGCAGTGTGCTTGTGCTGGCTCATTTAGGTGCAAGGAAGACGTTACTGAATTTCGCTCAAAGATGCAGGTTTTCTTCAACATAGCTTTTCGTCAGAAATTCCAACTTCTCCAGGAATGTACCTCTTGGATTTTAGAACTTAGATTGTAA 6624 0.4052 MNGDARRRDRRDNPRRSKKQKLICSAEEELEARLGFDLFSEGEKRLGWLLNFASSSCEDEETHKVYSCVDLYFVTQDGSSFKTKYRFRPYFYAATKNKMEMDVEAYLRRRYETQIADIEIIEKEDLDLKNHLSGLRKPYLKLSFDTVQQLMTVKSDLMHVVERNQAKSDAAEAYESILTERREQKPQDFIDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVCVSSTGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLITNRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEMKPGIYVTYNGDFFDWPFLEKRAEHHGFKMSEELGFQCDKNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVISPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLSKLRDVPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHIKKQIESDFVDGSNVRLSKSFLDLPKAEQQSRLKDRLKKYCQKAYKRVLNKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKGSGNPMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLDECYSAVAAVANRWLDLLDNQGKDITDSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETKAEVMKYYVRRWCKASSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAAMQKIANPVPRVAHPDWLHKKVREKEDKFRQRKLVDVFNSFKRDDRSKRNSDSNGVSLMADEENVIDLEDFGNKARNLPIGPRPIIRHYKANNEGNSIKLSGHGNSEQQHIDNSSKDESLSLFQQKEISSENVDRNVDYQGWLEIKKRKWKSILEKRKKRRLENSKKADRMNGVPEQMNGTTGRTNVSSYFRTNEVALKRYHWQIIQLLQSSQIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPVTEEFLGKSVKKTLPHGKQSYNLYEVSIDEVQFKEASKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKQRSLQDSWNLSELHMKTTTECSYLEQLISFFYLYHSISEGRAIYVGYFPASKSITVVVVNSYQNKDLSLAYLERQFHDACQALSIQPPPRNSISFKVDYVSHVKDAETLMQRAINDRRNEYHGPMVAIIECPNVQLLKLGIRSLDDFPCLSIPCNARDSQYQILGWQQVAGKIGMQRCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALRDSQQVLWISDGGLPDLGGINDEETCFLDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGALLGFDNEFNSGANPAIDQSGFDEAASCTHAFRVLKQLIQRCLADAVTSQNTYADAMLQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFAMLLAEFRKLGATIVFANFSKIIIDTGKYDLAAAKAYCDSLLRTIQSRDLFEWIELEPLQFWRSLLFMDQYNYGGIPAKSDESQVDIISSWNIAEYLPKKIQDHFIVIVSQFLYIPWSYAQKQAGIRESMLNGDSCTPSINIGAAEALESEMIEYIKEQISSYFTDNLLRIVRDIVLHMKGASKSEDDPSTSSGLPQIVGDQHRGDASLEFIKHVCAVLALDQSVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLSEQCACAGSFRCKEDVTEFRSKMQVFFNIAFRQKFQLLQECTSWILELRL* 2208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0175 2207 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Amo13g0175 2207 Gene3D - 942 1126 IPR042087 -
Amo13g0175 2207 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0175 2207 MobiDBLite consensus disorder prediction 1215 1237 - -
Amo13g0175 2207 MobiDBLite consensus disorder prediction 1280 1305 - -
Amo13g0175 2207 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo13g0175 2207 Pfam Domain of unknown function (DUF1744) 1531 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Amo13g0175 2207 CDD DNA_polB_epsilon_exo 241 444 - -
Amo13g0175 2207 CDD POLBc_epsilon 504 1123 - -
Amo13g0175 2207 Pfam DNA polymerase family B 762 1067 IPR006134 GO:0000166|GO:0003677
Amo13g0175 2207 Pfam DNA polymerase family B, exonuclease domain 75 401 IPR006133 -
Amo13g0175 2207 Gene3D - 239 469 IPR036397 GO:0003676
Amo13g0175 2207 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 34 2203 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Amo13g0175 2207 Gene3D DNA Polymerase, chain B, domain 1 56 232 - -
Amo13g0175 2207 SUPERFAMILY Ribonuclease H-like 65 468 IPR012337 -
Amo13g0175 2207 Gene3D Palm domain of DNA polymerase 753 938 IPR023211 -
Amo13g0175 2207 SMART DUF1744_2 1513 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0175 Amo-Chr13 2157775 2178768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0175 5 2203 Core DNA Replication Machinery Family AT2G27120 68.240 0.0 3071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0175 K02324 - gmx:100812003 3744.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0175 13 2157775 2178768 Amo13g0175 13 2157775 2178768 ECH