Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0167 ATGTATAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCGGTGCAGGAGGACAACAATGGCAACTACGCCAAGGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATCACGCAGAAATTCACCGAGTACCTTCGTCGTGCCGAGGAGATCCGTGCTGTTCTTGACGACGGTGGGACTGGGCCTGCCTCCAACGGGGACGCGGCCGTTGCCACCAGGCCCAAGACCAAGCCCAAGGACGGAGAAGGAGGCAGCGGAGGTGGGGACGGGGAGGATCCCGAGCAGGCCAAGCTGAGGGCGGGTTTGAACTCTGCCATCATTAGGGAGAAGCCTAACGTCAAGTGGAATGACGTGGCGGGTTTGGAGAGCGCCAAGCAGGCGTTGCAGGAGGCGGTTATCTTGCCCGTTAAGTTTCCTCAATTCTTCACTGGTAAAAGACGGCCTTGGAGAGCTTTTTTGTTGTACGGACCCCCCGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCTACATTTTTCAGTGTTTCTTCATCGGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAATCTTTTCCAAATGGCCCGGGATAGTGCACCTTCTATCATATTTGTTGATGAAATAGATTCGCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGTATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACGAATACACCTTATGCTCTTGACCAGGCCATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTGAAAGCCCGCCAACACATGTTCAAGGTGCATCTAGGCGATACACCTCATAACTTGACCGAGAGTGATTTTGAACACTTGGCACGCAAGACAGAGGGATTTTCAGGTTCAGATATATCTGTTTGTGTGAAGGATGTTTTATTTGAACCCGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCTGAGGGAATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAATACAAATCACAATGCAAGACCTTGCCGCAAAAGGACTTGCTGCTAAGATCCTTCCGCCACCTATATCGAGAACAGATTTTGACAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGATCTAGACGTACACGAGAGATTCACAAAGGAGTTTGGAGAGGAGGGTTAA 1314 0.4863 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGTGPASNGDAAVATRPKTKPKDGEGGSGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGPKQQGAIQITMQDLAAKGLAAKILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0167 437 CDD MIT_VPS4 4 78 IPR045253 -
Amo13g0167 437 PANTHER AAA DOMAIN-CONTAINING 1 437 - -
Amo13g0167 437 Gene3D - 129 425 IPR027417 -
Amo13g0167 437 Gene3D - 302 417 - -
Amo13g0167 437 SUPERFAMILY MIT domain 2 82 IPR036181 -
Amo13g0167 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Amo13g0167 437 CDD AAA 137 300 - -
Amo13g0167 437 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Amo13g0167 437 Gene3D - 6 75 - -
Amo13g0167 437 SMART smart 2 79 IPR007330 -
Amo13g0167 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Amo13g0167 437 MobiDBLite consensus disorder prediction 91 113 - -
Amo13g0167 437 SMART AAA_5 166 302 IPR003593 -
Amo13g0167 437 MobiDBLite consensus disorder prediction 74 113 - -
Amo13g0167 437 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 437 - -
Amo13g0167 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Amo13g0167 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0167 Amo-Chr13 2078760 2082676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0167 165 358 Calmodulin-binding Proteins AT3G56690 36.735 1.26e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0167 K12196 - gmx:100788150 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0167 13 2078760 2082676 Amo13g0167 13 2078760 2082676 ECH
Amo18g0648 18 8986834 8998466 Amo13g0167 13 2078760 2082676 PCT
Amo13g0167 13 2078760 2082676 Amo18g0648 18 8986834 8998466 PCT