Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0150 ATGGCGGAAGAACACAGGTGCCAAGCTCCACGCCTCTGCGTAAATAATTGTGGATTCTTTGGAAGCCCGACCACAAACGGCCTCTGCTCCAAGTGCTATCGCAATCTCCAGCTTAAGGAGCAGCAGTCTTCCTCTGCCAAATTGGTCCTCAACCAAACCCTGCAGGTTCCTCCGGCAGCAGAACCTATTTCTACTCCTTCAGCATCAACATCATCATCTTGTACGGAGGAGWTTGATCGTCCTTGCAGCGCAGCAGTGATGGAGGAGAAGGTRGCAGCGAATCGGTGTGCAAGATGCAGGAGGCGTGTGGGGCTTACGGGGTTCAAGTGCAGGTGTGGGTTGACGTTGTGTGGGTCCCATCGGCACCCAGAACAACACTCATGCCACTTCGATTTCAAGGGATTCGGGAGGGAGCAAATCGCAAAGGCAAACCCTCTAATCAAGGCCGACAAGCTTAACAAGATTTGA 468 0.5256 MAEEHRCQAPRLCVNNCGFFGSPTTNGLCSKCYRNLQLKEQQSSSAKLVLNQTLQVPPAAEPISTPSASTSSSCTEEXDRPCSAAVMEEKVAANRCARCRRRVGLTGFKCRCGLTLCGSHRHPEQHSCHFDFKGFGREQIAKANPLIKADKLNKI* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0150 155 Gene3D - 72 151 IPR035896 -
Amo13g0150 155 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Amo13g0150 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
Amo13g0150 155 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Amo13g0150 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Amo13g0150 155 Pfam AN1-like Zinc finger 96 132 IPR000058 GO:0008270
Amo13g0150 155 SUPERFAMILY AN1-like Zinc finger 83 150 IPR035896 -
Amo13g0150 155 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 155 - -
Amo13g0150 155 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Amo13g0150 155 Gene3D - 1 71 - -
Amo13g0150 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 155 - -
Amo13g0150 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0150 Amo-Chr13 1942659 1943709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0150 1 155 C2H2 Transcription Factor Family AT3G52800 46.524 3.46e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0150 - - mesc:110625469 205.297