Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0116 ATGACTGATGCTTCATTTGAGAGTGAGACGGAGTATTACACCCCAAACCATCACAAACGATACTATCCAACACCAGTAAGCCATCACAACGTCTTTGGCTCGGAGTCTTTCACAATGTCCACCTCTCAAACTCAACGCAAAGCCGCCAGCTCTAGAAGAGTTCGCCCCAACAGAATTCCCACGACGCCTTTCGCTTCGGATGATGATCATTCGTGGCAAGGAGAGGTTTCTTGGAAGTTCGAGGCCAGGGGATGGCAAGAGTACAGCGCACGCATGGGCTCTGTTCTGAATCTATGGCCAGTCGACTCCCCATTTGAACACAGCCGCGTGTTTCGTCAGTCGGCCAATGACTACTTCCTTTCACAAACTAGTCGATTCAAAGGCCACTCAGGCTCAACTTATCATAATGAGCATTCCGTCTACGGAAGAGTTGAGCTCCAGAGCTATGTTGCCGGGGACAGTGACCTTAGCGAGTCTCGTGGTTTCTCTAAAACAAAGGTCATAAAAGAAAGAGATAGCATAATAAGAAACAAGACTAGTCCGTTGGCCAAAGAAGACGAGCTCAGTTGGATAGACTATAGCATCTCTGATAAAGAAATTGGTGGGTATCACGCTGAATTCTCTTATACTAAACATGACCACCGTGGCAAGCATGGCGACAGTTACAGACTACCATCAGCCGTAGATAAATTCGGTACCCCGAGTTATGGTGTTGACAAGGTTACAGGGTATGAGTATGATGAAGAGGGCGAGGAGGAATTGGATGAGGAAGATGCAGGGCCTCCAAAGACAATTGGGTTGTTTCGGCTATTTAGGTATGCAACAAAGTGGGATTGGGTTCTTGTACTTGTAGGTTGTTTAGGTGCTTTCATAGATGGAGGCTCACTTCCTTTTTATTCTTATCTTTTTGGAGAATTGGTCAATAAGATTTCACAAAATGGGAATAATAAGCAAATGATGGAGGATGTAGAGAAGATATGCATATATATGACCGGGTTGGCTGCAGTTGTTTCGGTTGGAGCATATTTGCAGATCGCATGTTGGAGGTTAGTGGGCGAGAGATCTGCTCAAAGAATGAGGACGGAGTATTTAAGAGCAGTTCTTCGACAGGATATTAGTTTTTTTGATACACAGATCAACACTGGTGATATTATGCATGGAATAGCCAGTGATGTTGCACAAATCCAAGAAGTTATGGGAGAGAAGATGGCTCACTTTGTTCATCATATATTTACATTTATATGTGGCTACATAGTTGGATTTAGAAGATCGTGGAGAGTCTCTTTGGTGGTATTCTCAGTCACCCCATTAACAATGTTTTGTGGTATAGTCTACAAAGCAATTTATGGTGGTCTAACAGCAAAAGAAGAAGCTTCTTACAGGAAAGCTGGTGTTATTGCGGAACAAACGATCAGTTCAATTAGGACAGTGTTTTCTTTTGTTGCGGAAAGGCAATTGGCAGCAAAATATGCTCAATTACTACAAAAATCAGCCCCAATAGGCGCAAAAATTGGTTTTGCCAAGGGTGCAGGCATGGGCATTATCTATTTAGTAACATATTCGACATGGGCCTTGGCATTTTGGTATGGCTCCATCTTAATTGCCACGAACAAACTTGATGGGGGTGCAGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGAGGAAGAGGTCTAGCATTGGCGCTGTCATATTTTGCACAATTTGCACAAGGTACAGTTGCAGCAAGTCGTGTATTCTCTGTTATAGACAGAATTCCTGAGATTGATCCATATAGCCCTGACGGAAGGAAGCTTACTGTTGTCCGTGGTAGAATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGTCCTGATTCTCTGATACTTCATTCCCTTAATTTAGTATTTTCATCGACAAAAACTTTGGCACTGGTTGGTGCTAGTGGAGGGGGCAAGTCGACTATATTTGCTCTGATAGAGCGGTTCTATGACCCTATTGAAGGGACGATAACCTTGGACGGCCATGATTTGAGGACGTTGCAAGTCAAGTGGCTAAGAGGTCAAATTGGGATGGTTGGTCAAGAGCCAATCCTCTTTGCAACCTCCATACTAGAAAACGTTATGATGGGGAAAGATAATGTCACTAAGGAGGAGGCAATTGCTGCTTGCATTGCTGCAGATGCTCACAATTTCATATCTAACTTACCACTTGGCTATGACACTCAGGTCGGAGATAGGGGCACAAAACTATCAGGTGGTCAAAAGCAGAGAATCGCACTGGCTCGAGCAATAATCAAAGATCCTAAAATCCTTCTTTTAGACGAACCTACCAGCGCTCTTGATGCTGAGTCAGAGTCTGCAGTCCAACGAGCCATGGACAAGATTTCTGTGGGTCGAACAACCATTGTCATTGCTCATAGGATAGCTACTGTAAAGAATGCTCATGCCATCGTGGTCCTCGAAAATGGTACTGCCATTGAGATGGGTAACCATCTCCAGCTTATAGGGAAAGGGGGAACCTACTATAACCTTGTCAAACTCGCCAGCGAGGCCATATCAAGGCCTCTCTCTAATGAACATGACATGCAAAAATCCAATGACGACTCAATTGCTGATGTATCAAGATATGCAGCAGATATCTCGAGGCCTAAACATTTAAAATACGCTCAGGAGAAAAAAGTAGAGATCGAAGACGAGCCAAACAAAATGCCAAAAAAATTTAGACTTTCTGAGATATTGAAATTGCAAAAGCCAGAGCTTTGGATGCTACTTTTAGGATTCTTTCTGGGTATGTTTGCAGGCGCTTTTCTGTCTCTTTTTCCTTTGGTTTTAGGCATATCTCTTGGGGTATATTTTGATGATGACACTGATAAGATGAAGAGAGATGTTGGACACCTTTGTTTAGCACTTGTTTGTCTTGGATTCGGTTGTATTCTTTCCATGACAGGACAACAAGGATTTTGTGGTTGGGCAGGATCAAAGCTTACACTAAGGGTTAGAAACCTCTTGTTCCAGTCCATCTTGAAACAAGAACCCGGGTGGTTTGATTTTGATAAAAACTCGACTGGAGTGTTAGTGTCAAGGCTCTCCATTGATTGTGTCAGCTTTCGTTCAATACTTGGTGATCGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCAGCTGTCGGTCTTGGTGTTTCCTTTGTCATCAATTGGAAACTAACCCTTTTGGCGGCTGCTGTTACTCCCTTTACTCTTGGTGCAAGTTATGTAAGCTTGCTTATAAATATTGGACCACATGTTGATAACAATGCATATGCCAAAGCTAGCAATATTGCTTCTGGTGCAGTATCAAACATAAGAACGGTTACCACGTTTTCTGCCCAGGAAATATTAATTAAGTCCTTTGATCAAGCCTTATCAGAACCTCAAAGGAAATCATTGAAAAGTTCGCACATTCAAGGTCTAACATTTGGGTTCTTTCAAGGTGCCATGTATGGAGCGTACACCTTGGTTCTTTGGTTTGGTGCCAGACTTGTAGATCGTAGCGAAGCGAAGTTGGGAGATGTTTTTAAGATCTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCGGCCACAGCAATCCCTTCTGTTCAAGATATCATAAACCGGAGGCCGCTGATAGGGAACGATAAGTCAATAAGAAGCAAGAAAGTAGAAGATCGATTAAAGTCGCCTTTCAAAATAGAATTCAAAATGGTCACATTTGCATACCCATCTAGGCCTGCAGTTACAGTGCTAAGGGATTTCTCTTTGAAGGTCAAAGGTGGAAGCACCGTGGCCTTGGTAGGACCCAGTGGATCAGGAAAATCAACCATCATATGGTTGATACAGAGGTTCTATGATCCAAATAAAGGAAAAGTGATGCTAAGTGGGGTAGACCTTATGGAAATTGATGTTAAGTGGTTAAGGAGGCAAATGGCTTTAGTGGGTCAAGAACCAGCACTGTTTTCTGGGAGTATAAGGGAGAACATTACCTTTGGGGACCCAAATGCGTCATGGGCTGAAATTGAAGCAGCTGCAAAAGAAGCTTACATCCACAAATTCATTAGTGGCCTTCCTCAAGGTTATGAGACCCAGGTTGGTCAAAGCGGGGTCCAACTATCAGGTGGCCAAAAACAAAGAATTGCAATAGCAAGGGCTATACTGAAGAAATCAAGGGTGATTCTACTTGATGAAGCAAGCAGTGCTTTGGACTTGGAGTCAGAGAAACACATCCAAGATGCCCTTAAGAAAGTTTCCAATGAAGCAACAACCATCATTGTAGCCCATCGTCTATCGACAATTAGAGAAGCTGACAAGATAGTGGTTATGAAAGATGGGGGAGTAGCAGAGTATGGAAGTCATGACACACTGATGACTTCCCATCAAAATGGTCTGTATGCTAGCCTAGTTCGTTCTGAGACCGAAGCCAATGCCTTTGCTTGA 4470 0.4306 MTDASFESETEYYTPNHHKRYYPTPVSHHNVFGSESFTMSTSQTQRKAASSRRVRPNRIPTTPFASDDDHSWQGEVSWKFEARGWQEYSARMGSVLNLWPVDSPFEHSRVFRQSANDYFLSQTSRFKGHSGSTYHNEHSVYGRVELQSYVAGDSDLSESRGFSKTKVIKERDSIIRNKTSPLAKEDELSWIDYSISDKEIGGYHAEFSYTKHDHRGKHGDSYRLPSAVDKFGTPSYGVDKVTGYEYDEEGEEELDEEDAGPPKTIGLFRLFRYATKWDWVLVLVGCLGAFIDGGSLPFYSYLFGELVNKISQNGNNKQMMEDVEKICIYMTGLAAVVSVGAYLQIACWRLVGERSAQRMRTEYLRAVLRQDISFFDTQINTGDIMHGIASDVAQIQEVMGEKMAHFVHHIFTFICGYIVGFRRSWRVSLVVFSVTPLTMFCGIVYKAIYGGLTAKEEASYRKAGVIAEQTISSIRTVFSFVAERQLAAKYAQLLQKSAPIGAKIGFAKGAGMGIIYLVTYSTWALAFWYGSILIATNKLDGGAAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFSVIDRIPEIDPYSPDGRKLTVVRGRIELKNVSFAYPSRPDSLILHSLNLVFSSTKTLALVGASGGGKSTIFALIERFYDPIEGTITLDGHDLRTLQVKWLRGQIGMVGQEPILFATSILENVMMGKDNVTKEEAIAACIAADAHNFISNLPLGYDTQVGDRGTKLSGGQKQRIALARAIIKDPKILLLDEPTSALDAESESAVQRAMDKISVGRTTIVIAHRIATVKNAHAIVVLENGTAIEMGNHLQLIGKGGTYYNLVKLASEAISRPLSNEHDMQKSNDDSIADVSRYAADISRPKHLKYAQEKKVEIEDEPNKMPKKFRLSEILKLQKPELWMLLLGFFLGMFAGAFLSLFPLVLGISLGVYFDDDTDKMKRDVGHLCLALVCLGFGCILSMTGQQGFCGWAGSKLTLRVRNLLFQSILKQEPGWFDFDKNSTGVLVSRLSIDCVSFRSILGDRFSVLLMGLSSAAVGLGVSFVINWKLTLLAAAVTPFTLGASYVSLLINIGPHVDNNAYAKASNIASGAVSNIRTVTTFSAQEILIKSFDQALSEPQRKSLKSSHIQGLTFGFFQGAMYGAYTLVLWFGARLVDRSEAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPSVQDIINRRPLIGNDKSIRSKKVEDRLKSPFKIEFKMVTFAYPSRPAVTVLRDFSLKVKGGSTVALVGPSGSGKSTIIWLIQRFYDPNKGKVMLSGVDLMEIDVKWLRRQMALVGQEPALFSGSIRENITFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGQSGVQLSGGQKQRIAIARAILKKSRVILLDEASSALDLESEKHIQDALKKVSNEATTIIVAHRLSTIREADKIVVMKDGGVAEYGSHDTLMTSHQNGLYASLVRSETEANAFA* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0116 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1243 1479 IPR003439 GO:0005524
Amo13g0116 1489 SUPERFAMILY ABC transporter transmembrane region 262 590 IPR036640 GO:0005524|GO:0016021
Amo13g0116 1489 Pfam ABC transporter 623 772 IPR003439 GO:0005524
Amo13g0116 1489 CDD ABC_6TM_Pgp_ABCB1_D2_like 907 1222 - -
Amo13g0116 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1480 IPR027417 -
Amo13g0116 1489 SMART AAA_5 1270 1456 IPR003593 -
Amo13g0116 1489 SMART AAA_5 632 833 IPR003593 -
Amo13g0116 1489 PANTHER ABC TRANSPORTER B FAMILY 215 1488 - -
Amo13g0116 1489 CDD ABC_MTABC3_MDL1_MDL2 1243 1480 - -
Amo13g0116 1489 SUPERFAMILY ABC transporter transmembrane region 898 1220 IPR036640 GO:0005524|GO:0016021
Amo13g0116 1489 Gene3D - 595 852 IPR027417 -
Amo13g0116 1489 Gene3D - 1231 1483 IPR027417 -
Amo13g0116 1489 CDD ABC_6TM_Pgp_ABCB1_D1_like 283 578 - -
Amo13g0116 1489 Pfam ABC transporter 1261 1409 IPR003439 GO:0005524
Amo13g0116 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 840 IPR027417 -
Amo13g0116 1489 Pfam ABC transporter transmembrane region 283 551 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g0116 1489 Pfam ABC transporter transmembrane region 917 1188 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g0116 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1204 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g0116 1489 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 283 570 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo13g0116 1489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 841 IPR003439 GO:0005524
Amo13g0116 1489 PANTHER - 215 1488 - -
Amo13g0116 1489 ProSitePatterns ABC transporters family signature. 1382 1396 IPR017871 GO:0005524
Amo13g0116 1489 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Amo13g0116 1489 Gene3D ABC transporter type 1, transmembrane domain 1206 1485 IPR036640 GO:0005524|GO:0016021
Amo13g0116 1489 CDD ABC_MTABC3_MDL1_MDL2 605 842 - -
Amo13g0116 1489 Gene3D ABC transporter type 1, transmembrane domain 269 1205 IPR036640 GO:0005524|GO:0016021
Amo13g0116 1489 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0116 Amo-Chr13 1674297 1683771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0116 948 1489 Calmodulin-binding Proteins AT2G36910 36.765 3.04e-99 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0116 K05658 - gmx:100816700 2156.33