Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0113 ATGAATAAAGCGATCGATTTTGCTTCAATTTTCTTACTCTTCACACTCTTTCCTCATCAATTTATTGTTCGTGTTTCTTCATCCAGTTCACCCATACATCCGAACCAGGGATATGCAGATGAAAGAATTCTCAAACCGGAACAAGAGCATGTCCATGAAGTGCATTGCTCTAGAGAAAGGAGCAGGGCAGCTAGGAAAGTAATAGAGGAGTATTTGACACCATTTTTGGAGCAAGAAAACTATCAGCTTTCAAGCAAGTGCAGACTTCACCCTGAAAATGACATGTTTAGGGATCAAGAAGAGCATAAAATTTGCCTAGGCTTTCATGACTGGAAGTGCGGATATTGTAAGAAAAGCTTCCGAGATGAGAAGTTTCTTGATCAGCATTTTGATAACAGACACTCCAATCATCTCAATTTAAGTGATGGTAAGTGCTTGGCTGATTTATGTGGGGCATTGCATTGCGATGCTGTGATGAACACAAAGTTCTCTAGAAGCAAGTGTAATCCAGCTGCTGCCACAAGGAATAAACACCTATGTGAGAGTCTTGCTGAGAGTTGTTTTCCTGTAAGTGATGGTCCATCTGCAAGTCGTCTTCATGAAATATTTTTACACCAATTTTGTGAGGCCCATACCTGCTCAGGGAAACAGAAACCCTTCTCTAGAGGAGGCAAGGTACAAAAAAGTATCTTTGTCGTGGTTTCTGGAGCATTGATCTTGGTGCTACTTCCTTTGTTCTATCTTTTCCTTTATCTGGTACAAAGAGATATGAAGAGTAGTACTCAAGAACTTCGCCGCATCTCAAAAATGGGACGGAAATCAAAGCCATCATGA 834 0.4077 MNKAIDFASIFLLFTLFPHQFIVRVSSSSSPIHPNQGYADERILKPEQEHVHEVHCSRERSRAARKVIEEYLTPFLEQENYQLSSKCRLHPENDMFRDQEEHKICLGFHDWKCGYCKKSFRDEKFLDQHFDNRHSNHLNLSDGKCLADLCGALHCDAVMNTKFSRSKCNPAAATRNKHLCESLAESCFPVSDGPSASRLHEIFLHQFCEAHTCSGKQKPFSRGGKVQKSIFVVVSGALILVLLPLFYLFLYLVQRDMKSSTQELRRISKMGRKSKPS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0113 277 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 25 277 - -
Amo13g0113 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 139 IPR013087 -
Amo13g0113 277 ProSitePatterns Zinc finger C2H2 type domain signature. 113 134 IPR013087 -
Amo13g0113 277 PANTHER ZINC FINGER PROTEIN-RELATED 25 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0113 Amo-Chr13 1651232 1654202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0113 35 277 C2H2 Transcription Factor Family AT5G63280 59.677 7.28e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g0113 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0113 - - gmx:100780668 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1568 11 65968642 65973609 Amo13g0113 13 1651232 1654202 ECH
Amo13g0113 13 1651232 1654202 Amo13g0113 13 1651232 1654202 ECH