Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0110 ATGCGTCCCGAGGCACTAGTGTGTGAAGAATGCGCCTGCAGGTGTGTTTTGTTGCACGGAAACGAGAAGAAAAAATCGTCACTTTTTCCTCCTTCTTTCTTCAAGATCATGTTTGACTCGAACTTTTCCACTATTATGTATCTTCCTGACAAGTTTAAACCTGCTGTAGCTGCCTCCGTTAATAAGAAAATCATTCTTGCTGACAAAAGTGGGGAGAGATGGAAAGTAACTTTATCCAAAGCCGGTAGTCACTTGGTTTTCAAGGAAGGATGGAATAAGTTTTCGTCGGACCATGGACTTGAACGTGGAGATATTCTGGTATTCCATCATGTTACTGATGTGCACTTTTATGTTACAATCTATGATAAATATGCTTGTGAAAAGCTTTGTTTTTCGAATACGAGAAATAAGACAAAACGTAGAAGGGACAGTAGTGTCTCTCCAGTTAGAGATGTCATGTTGGCTACACCAGATCAAAATGCGTCGGTTGTTTCTGAGCCAGATGCTAAAAAGACAAATAGTCAGAACAAAGTGGTTGGTGTAGGAGGAACACCAAATAATGTAGAGAATATTTCAAAACATGATAAGAGCAATGGAAGTGTCAAATCTACGAGAATGACAGAAAACTATGACAACACTGCGAAAATTACAGCCAGAGAATCAAGAGTTTCTCCTGTCAACTACAAATTGTGCATGAATCCAGTCGATGCAATTCTATGCGACAACTCTCCTTCATTTGAAGAGAGATTCAGAGGAGCTGCTGCATTTTTGTCAGAAGCTGAACTATCTGGAAAAAGGGATTCTATTAGAAATACTGACAGAAGCACATACGACAATACTTCTACTTGCAAACTTGGAGAAAGAAAAGAGAAGAATGTTTTGAAAAGGGAAGTTAGAGAGTTCCAATATGCTGAGGACTTAGAAGGTGATAATAAGGTGGCAATGTCCAAGAAAGAACATGGCTTTCATATTGATGGATGTCTCAACACCAAACCAATGTTAAATGCCACACCGAATATCTCAGATGCTATTCGACTCAAAAGTGATCCTATGGCAACATCCAAGGGAAAACATGGATTGCAAATTGATGGATGCCCCAATACCAAAAATATTGTCAATAATGGCATACCAAGGGTCTCAAGTGCTATTCAAAACGGCAAAATCTTAAAAAAGATTAAGAGCGAGCAGGCAGACAGGAATCCCAGTGAGGAGTGCACTTTTAAGGACAAAGTGTGTGCAAAAGGTGAAATGCCCAAAAGGATTAAAAAAGAGCCGCGTATGGATATGACTTACAACATGTCCAGATTCAAGGATGAATTCGAAGCCAGAGGTATTGAAGTTCCCAAAGGCTTTCCAAAGGTTATCAAGAAAGAGTTTGAGAAGAGTTCACACAAGACTGAACAAAATGATGATAACGATGATGACAGTGATAACATTCAATTGGCAGAAGTTGTGCGCTGCGTGGTGCCCGATCATAATGATAAATTTCTTGAATTGCCTACAAACTTGCATCAGTGCCGGAACTATAAAAATAACAGGATGGTGGTGATCCTGCGAGATCCGCAGAGGAGACTATGGCCGGTTCTTTACCATGATCTTCATGATAAAAAAATGCATGGTACAAAAGCCTTTTATCTGATAAAAGGGTGGTCACAATTTTACAGAGCCAATAATGTTCAACCAGGAGATTTGTGTACTTTTGAACTTAAGGAGGAGGATAAACACATCTTCAATGTAGTATATATGTGA 1749 0.3939 MRPEALVCEECACRCVLLHGNEKKKSSLFPPSFFKIMFDSNFSTIMYLPDKFKPAVAASVNKKIILADKSGERWKVTLSKAGSHLVFKEGWNKFSSDHGLERGDILVFHHVTDVHFYVTIYDKYACEKLCFSNTRNKTKRRRDSSVSPVRDVMLATPDQNASVVSEPDAKKTNSQNKVVGVGGTPNNVENISKHDKSNGSVKSTRMTENYDNTAKITARESRVSPVNYKLCMNPVDAILCDNSPSFEERFRGAAAFLSEAELSGKRDSIRNTDRSTYDNTSTCKLGERKEKNVLKREVREFQYAEDLEGDNKVAMSKKEHGFHIDGCLNTKPMLNATPNISDAIRLKSDPMATSKGKHGLQIDGCPNTKNIVNNGIPRVSSAIQNGKILKKIKSEQADRNPSEECTFKDKVCAKGEMPKRIKKEPRMDMTYNMSRFKDEFEARGIEVPKGFPKVIKKEFEKSSHKTEQNDDNDDDSDNIQLAEVVRCVVPDHNDKFLELPTNLHQCRNYKNNRMVVILRDPQRRLWPVLYHDLHDKKMHGTKAFYLIKGWSQFYRANNVQPGDLCTFELKEEDKHIFNVVYM* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0110 582 Gene3D - 27 126 IPR015300 -
Amo13g0110 582 Gene3D - 480 582 IPR015300 -
Amo13g0110 582 SMART B3_2 484 580 IPR003340 GO:0003677
Amo13g0110 582 SMART B3_2 33 124 IPR003340 GO:0003677
Amo13g0110 582 ProSiteProfiles B3 DNA-binding domain profile. 482 582 IPR003340 GO:0003677
Amo13g0110 582 SUPERFAMILY DNA-binding pseudobarrel domain 487 574 IPR015300 -
Amo13g0110 582 MobiDBLite consensus disorder prediction 159 194 - -
Amo13g0110 582 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 579 IPR044837 -
Amo13g0110 582 MobiDBLite consensus disorder prediction 159 204 - -
Amo13g0110 582 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Amo13g0110 582 Pfam B3 DNA binding domain 498 574 IPR003340 GO:0003677
Amo13g0110 582 Pfam B3 DNA binding domain 33 123 IPR003340 GO:0003677
Amo13g0110 582 SUPERFAMILY DNA-binding pseudobarrel domain 30 126 IPR015300 -
Amo13g0110 582 CDD B3_DNA 31 122 IPR003340 GO:0003677
Amo13g0110 582 CDD B3_DNA 493 575 IPR003340 GO:0003677
Amo13g0110 582 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 10 579 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0110 33 127 B3 DNA Binding Superfamily AT4G01580 28.125 1.80e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo13g0110 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0110 - - adu:107478866 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0110 13 1627577 1632571 Amo13g0110 13 1627577 1632571 ECH