Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0108 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACAACCACCACCAAAGACCCACAATTGGGTTCTCAGAGTGAACCTTCTTCTCCTTTTCCCAATCATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGAACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGGCTGTTAAAGAGAAGGTTGGGGGAGAAAGAGAAGAACCGGCTGAAAAATCGGGCCAGATAGAATGCAAGTATTATTTAAGGTCGGGAGGATGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGCCTTCAGCTGCGCCACTTTTGGAGCTTAACTTTCTTGGCTTGCCTATACGATTGGGAGAGAAACAATGTCCCTATTACATGCGCACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTAGAGTTGGGGATTCTGTTTCAGGATTTGGTAATGGTAATTATGTACCCCTACAAGGCGCATCACAACCATCTGGTCCCTCGTGGTCATCTTCAAAAACATTAAATGATACTGCTCCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGCGGTTTCTCCCCGAAGTCCTGAATGGAACGGATACCAGGCACCTGTCTATTTATCCGAGAGGAGTATGCACCCACCATCGGCATATGTCATGAACAACCCAACAATCGAAACACCCATGTACATGCACCAACCAAAGCAGACGCCAATTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGAGATTGCAAGTTCAAATCCAATTGTAAATTCCATCATCCAAAGAATCGGGTTGCAAGAATACCTCCGTGCAACCTCAGTGACAAGGGCCTGCCTCTGAGACCTGACCAGAATGTATGCTCCCATTACAGCCGCTACGGGATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGGTAATAAACCCATCTCCCCCAAGTAGTCCTGGACTTGATCAGCAAACTTCTTATACAGACACGCCTAATGAGATGACTACGATGGAGGGAAATGGAGATGCCAATGATGAGGCAATTCGTCAGCCTGTTTAG 1593 0.4476 MEPSESESVGSSTTTTTKDPQLGSQSEPSSPFPNHHHDPQQSEPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSNFVAGSGEYGGEELGGEGGCAPETGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQAVKEKVGGEREEPAEKSGQIECKYYLRSGGCKFGKACKFNHTRGKPSAAPLLELNFLGLPIRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGRVGDSVSGFGNGNYVPLQGASQPSGPSWSSSKTLNDTAPFVPMMLSPSQAVSPRSPEWNGYQAPVYLSERSMHPPSAYVMNNPTIETPMYMHQPKQTPIEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARIPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPVINPSPPSSPGLDQQTSYTDTPNEMTTMEGNGDANDEAIRQPV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0108 530 SUPERFAMILY CCCH zinc finger 420 444 IPR036855 GO:0046872
Amo13g0108 530 MobiDBLite consensus disorder prediction 127 147 - -
Amo13g0108 530 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Amo13g0108 530 SUPERFAMILY CCCH zinc finger 279 305 IPR036855 GO:0046872
Amo13g0108 530 MobiDBLite consensus disorder prediction 1 37 - -
Amo13g0108 530 MobiDBLite consensus disorder prediction 495 517 - -
Amo13g0108 530 SUPERFAMILY CCCH zinc finger 184 212 IPR036855 GO:0046872
Amo13g0108 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Amo13g0108 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 442 IPR000571 GO:0046872
Amo13g0108 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 209 IPR000571 GO:0046872
Amo13g0108 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 487 IPR000571 GO:0046872
Amo13g0108 530 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 304 IPR000571 GO:0046872
Amo13g0108 530 SUPERFAMILY CCCH zinc finger 237 260 IPR036855 GO:0046872
Amo13g0108 530 Gene3D - 459 518 - -
Amo13g0108 530 Gene3D - 383 457 - -
Amo13g0108 530 MobiDBLite consensus disorder prediction 1 178 - -
Amo13g0108 530 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Amo13g0108 530 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Amo13g0108 530 Gene3D - 157 221 - -
Amo13g0108 530 MobiDBLite consensus disorder prediction 489 530 - -
Amo13g0108 530 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Amo13g0108 530 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Amo13g0108 530 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Amo13g0108 530 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Amo13g0108 530 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Amo13g0108 530 MobiDBLite consensus disorder prediction 50 83 - -
Amo13g0108 530 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 530 - -
Amo13g0108 530 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Amo13g0108 530 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Amo13g0108 530 Gene3D - 223 308 - -
Amo13g0108 530 SUPERFAMILY CCCH zinc finger 459 487 IPR036855 GO:0046872
Amo13g0108 530 PANTHER PROTEIN PHOSPHATASE RELATED 13 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0108 Amo-Chr13 1575334 1578914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0108 180 488 C2H2 Transcription Factor Family AT3G02830 41.846 4.15e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo13g0108 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0108 - - gmx:100809626 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1562 11 65481357 65486379 Amo13g0108 13 1575334 1578914 ECH
Amo13g0108 13 1575334 1578914 Amo13g0108 13 1575334 1578914 ECH