Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0107 ATGGCGGAACCAAACGGCGACGTTTTCCAGTGGCTGAAGTCGATGCCGTTAGCGCCGGAGTACAGGCCGACGCTAACGGAATTCCAAGATCCGATCGCCTACATTTTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAGATCATACCGCCGTTTCCACCGCCGCCGAGGAAGGTTGCAATTGCCAACTTCACTCGCTCGCTGACTAAGCCCGACGAGCCTAACTCAAAGCCTACATTCACCACTCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGGCCCAGGCCCGTTCAGAGGCCCGTGTGGCAAAGCGGTGAGAACTACACTTTTCAGGAATTCGAGGCTAAGGCCAAAGCATTCGAGAAGAGCTACCTCAAGAAGCATCATCTTCACCACCAAGGCCACCGGAAGGGAGGAGGAGCTGGTGGTGGTTCCGGTGGCCTAGGGCCTCTCGAGGTGGAGACGCTGTTCTGGAAGGCGACCGTTGACAAGCCGTTCTCGGTGGAGTATGCGAACGACATGCCGGGCTCGGCGTTCAGCCGGAAATGCAGGGAGGAGTGTGCGGCGGCGCTAGCGGAGTCGGCGTGGAATATGAGGGAGATTTCGAGGGCGAATGGTTCGTTGTTGAGGTTCATGAAGGAGGAGATACCTGGTGTTACTTCTCCTATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGGAAGACCTGGTATGGCGTGCCGAGAGATGCAGCCGTTGCGTTCGAAGATGTTGTTAGGGTTCATGGATATGGCTCTGAGATTAATCCTCTTGTTACTTTTTCTACTCTTGGCGAGAAAAACACAGTGATGTCACCTGAAGTATTGATAAACGCAGGTGTTCCATGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCTTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCCAACATTGCAACGCCTGAATGGTTGAGAGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCAGTAAATCATTCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTAGCCTTAGCTTTGTGTTCTAGAATTCCTGAGAGTATCACTGCTGAACCACGGAGTTCTCGCCTTAAAGATAAGAAGAGGGGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTCACAGAACAATGATCTGCTTCAAGAACTCAGCAAAGGATCTGAGATAATACTTCTACCTCGTAGCTCATTTGACATTTCTCTTTGCTCAAAATTACGTTCTGGATCCAAACAGCGAAAAGTGAACTCTCGATTTTCCCTTGGTGCATGCAACTCCGAGGAAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGCGTTCAGCATGAACAGAGGAATCAAGCAAGAAGGTTCCCTTTCTATAAAAGACAAGATTACTTCATTGTGTGAAAGGAGCATGATTTCCTCATATGATGTAAATGGCAACATCTGCTCTTCAAGTTCCAAGCAACTTCAAGGTGACAATGAAAGAGAAAGTGGTGAAGGGGATGGATCGCCAGATAAGAGACTTTTTTCATGTGTCACATGCGGAATATTGTGCTTTCCTTGTGTAGCTATTGTACAGCCTAGAGAATCTGCTGCTAGATATCTCATGTCAGCTGATTGTAGTTTCTTTAACGATTGGGTCGTTGGTTCTGGAGTGTCTAGCAAAAAGTTTATTGTCCATGAAGAAGCGGCTTTTCCTGAATCAAGGTGGACAGAAAAGAAGACCCAAAATGGATTGTATCAGGATCCTGTTCAATCTGCCCAGTATCAGCTACTGACTGCTGAGCGTAATTATGCGGAGTCCCTTAATTCTGATAGAGGAAAAAGCAATACAGCTCTTGCATTGTTGGCTTCAACATATGGAAATTCTTCTGACTCTGAGGAAGAGCAGGGTGACTCAGATATTGTAGTTGATGGTCATGAATCACCTGTGATTAATGCCACATTAGGAGGATCACCATCTAATTTTCAAGATGCCTGTGCTATTCCCCCGACTGGACCTGATAGCAGAAATGATTTTAGTCATCAATCTTTTGACCACTCTTTAGAAAAACAGGATTCTGATACTGCTTCAGGGCTTGCATTAAAAAATATGAGGGCAATGTATACCAATGATACTGAAAAAGCATTGTTGGGCAAGGCTATGGTTCCAAATGATGATAAAAATGCCTCTGTGATCCCACAAGGTGATGAAGACTCATCTAGAATGCATGTCTTCTGTCTGGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATAATGCTCCTATGTCATCCAGATTTCCCCAAGATAGAGGCTGAAGCTAAGCTTGTAGCAGAAGATCTTGGGATTGATTACCTGTGGAAGAAGATTGAGTACAGGCATTCCAGCAAGGAGGATGAGGAGAGGATCCAGGTAGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGTGTGTGAAGCTGGGAATCAATCTTTTCTACAGTTCAACTCTTAGCCGTTCTCCTCTTTACAGTAAGCAGATGCCTTACAATTCTGTCATATATTATGCATTTGGCCAAAGCTCTCCAGGAAGTTCACCATTAGAACCAAAGGTCTATCAGAGAAGGGTTAACAAGCAGAAAAAGATAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAGTCAGGTACATCCTCTTTTGGCCAAAAGAGATTCTGAAGATGTTGAAGATGAGAAAAGCTTACATGGGTGGGGATTACATGATGAGAAAATAGAGAGATCAGGAAGCATCCCTAAAAGCGAAACTAGTGCCAGAAAATCAGGTAAGAAGCGGAAAATGACTATTGAGAATGGAAGAGCCAGGAAAGGCAGTTTTGCTGAGAGAGATGTGGATTTGGATAATCCAACTGAAGACAAACCTAACCAACAGCTGAGGAGGACTCTTAGAAGTAAGCAAGCCAGGGATATTGAGAGTGAAGGTGCTGATTTGGAAGGGGATTATTCTCCCCCATATCATCATAGAAAACCTTTAAGTGACCAAACAAATTGCACAGGAAGTGATGCTGTTTCTGATGATTCACTTGATGATAAATTTATTGACAATGATGTGCTTTCGGATGATACAATGGTCTATGATTCTGATTGCCATCAGAGATTTGAACATAGCAGCATGCAAGTTGAAGACATAGAAGATGCAGTTTCTGAGGATTCATTGGATGACAGTTCTCTTCAGCTTCATAGGAAGAATTCTAAAAGCAAGCATGCCAGATACATTAGAAAAGGCAGATGCATTGCTGAGAAAGAGGAAATGATGTCTGATGACCAATTGGAGCCACACAAGAAGAAGAAGCAACAGAGGAATCCTAAAAGCAGGCAAGCGAAATACCTTGCAAGAGAAGATGCTATATCACATGGTCAATTGGAGGGACATTGTCGCAAGTATAGAAAGACTCCTAAAGGTAGACTGGCCAAATATGTAGCAGGGGAAGATGTATCATCTGATGAGCAATTGGAGAATTACAGTCGGAAGCAGCAAACAAGTCTTCCTAAAAGGCGGAAAAACAAAGGTGTATTGACTGATGACCAATTGGAGGACCATTTTCAGAAGCAGCAAAAGAGTGTTTCTAGGAGAAGGCAAAACAAAGGCATTGAAAGAGGGGTTAAAGACGAAATGTCTGATGACCAATTAGAGGATCACGTTCAGAAGCAGCAAACTAGTGTTTCTAGGAGGAGGCGAAACAAACAAATTGAAAGAGAAGATGTGATGTCTGATGATGAAATGGAGGATCACATTCAGAAGCAGCGGAGTAGTATTCCTAGAAATAGGCAAAACAGTAATTCTCATCTGGTCCATAAAACTCCTAAACGAAAGCAAGCGAAATGCGTTGATGATGATGATGGTGATGATGATGATGTAAATTCTGATGATGAAGTGGAAGATGATTCTCAGCAGAAGCAGCAGAGAACTCTTAGAAGTAAGCAATCAAAACCAATGACACTCAAGCAGATGAAGCAAGCTCGCTCTCTCCAAATGAAAAATCAGACATCCCGGCCTGTAAAACGAGGTGCTCAGACACTTAAGAAATTAAAGGCATCTCAGATTCGGAATAAGCAATCTGGTAAATCCAGAGAGTTTAGTTTGAAAATGGAAGAGGGGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCCCAAAAGTCGAGGAGTCTGATGGAATATCAAAAGAAAAGCAAACCAAAAAGAAAAGGGTGAAGAATGCTACATCTGCAAAGGCAGCTAGCAATGCTAAAGTGAAGGATGAGGAAAATGAATTCCAGTGTGACATTGATGGCTGCACCATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCACAAGAGAAATATATGTCCTGTAAAAGGTTGCGGGAAGAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGACGAGTTCACGAGGATGACCGCCCATTGAAGTGCCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAACATATTCGAGTCCACACTGGTGCGCGACCATATGTATGTGCCGAGCCAGGCTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGCCATAAGCGTAAGACTGGGCACTCAACAAAGAAGAGTCGCTAA 4782 0.4463 MAEPNGDVFQWLKSMPLAPEYRPTLTEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPRKVAIANFTRSLTKPDEPNSKPTFTTRQQQIGFCPRRPRPVQRPVWQSGENYTFQEFEAKAKAFEKSYLKKHHLHHQGHRKGGGAGGGSGGLGPLEVETLFWKATVDKPFSVEYANDMPGSAFSRKCREECAAALAESAWNMREISRANGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEDVVRVHGYGSEINPLVTFSTLGEKNTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASVNHSPMVSHFQLLYDLALALCSRIPESITAEPRSSRLKDKKRGEGETVIKELFVQDVSQNNDLLQELSKGSEIILLPRSSFDISLCSKLRSGSKQRKVNSRFSLGACNSEEMNSSKGFVSDDLAFSMNRGIKQEGSLSIKDKITSLCERSMISSYDVNGNICSSSSKQLQGDNERESGEGDGSPDKRLFSCVTCGILCFPCVAIVQPRESAARYLMSADCSFFNDWVVGSGVSSKKFIVHEEAAFPESRWTEKKTQNGLYQDPVQSAQYQLLTAERNYAESLNSDRGKSNTALALLASTYGNSSDSEEEQGDSDIVVDGHESPVINATLGGSPSNFQDACAIPPTGPDSRNDFSHQSFDHSLEKQDSDTASGLALKNMRAMYTNDTEKALLGKAMVPNDDKNASVIPQGDEDSSRMHVFCLEHAVEAEQQLRPIGGAHIMLLCHPDFPKIEAEAKLVAEDLGIDYLWKKIEYRHSSKEDEERIQVALDSEEAIPGNGDWCVKLGINLFYSSTLSRSPLYSKQMPYNSVIYYAFGQSSPGSSPLEPKVYQRRVNKQKKIVAGKWCGKVWMSSQVHPLLAKRDSEDVEDEKSLHGWGLHDEKIERSGSIPKSETSARKSGKKRKMTIENGRARKGSFAERDVDLDNPTEDKPNQQLRRTLRSKQARDIESEGADLEGDYSPPYHHRKPLSDQTNCTGSDAVSDDSLDDKFIDNDVLSDDTMVYDSDCHQRFEHSSMQVEDIEDAVSEDSLDDSSLQLHRKNSKSKHARYIRKGRCIAEKEEMMSDDQLEPHKKKKQQRNPKSRQAKYLAREDAISHGQLEGHCRKYRKTPKGRLAKYVAGEDVSSDEQLENYSRKQQTSLPKRRKNKGVLTDDQLEDHFQKQQKSVSRRRQNKGIERGVKDEMSDDQLEDHVQKQQTSVSRRRRNKQIEREDVMSDDEMEDHIQKQRSSIPRNRQNSNSHLVHKTPKRKQAKCVDDDDGDDDDVNSDDEVEDDSQQKQQRTLRSKQSKPMTLKQMKQARSLQMKNQTSRPVKRGAQTLKKLKASQIRNKQSGKSREFSLKMEEGEEGGPSTRLRKRAPKVEESDGISKEKQTKKKRVKNATSAKAASNAKVKDEENEFQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKSR* 1594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0107 1593 Gene3D Cupin 11 366 - -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1107 1126 - -
Amo13g0107 1593 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1336 1350 - -
Amo13g0107 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1563 1587 IPR013087 -
Amo13g0107 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1561 1592 IPR013087 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1360 1393 - -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1413 1451 - -
Amo13g0107 1593 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1584 - -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1225 1308 - -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1138 1470 - -
Amo13g0107 1593 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1584 - -
Amo13g0107 1593 SMART JmjN_1 17 58 IPR003349 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 705 728 - -
Amo13g0107 1593 Gene3D Classic Zinc Finger 1499 1585 - -
Amo13g0107 1593 SMART cupin_9 192 361 IPR003347 -
Amo13g0107 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1525 IPR013087 -
Amo13g0107 1593 Coils Coil 1457 1477 - -
Amo13g0107 1593 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
Amo13g0107 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1530 IPR013087 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1047 1061 - -
Amo13g0107 1593 SUPERFAMILY beta-beta-alpha zinc fingers 1501 1537 IPR036236 -
Amo13g0107 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1531 1560 IPR013087 -
Amo13g0107 1593 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Amo13g0107 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1533 1555 IPR013087 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1164 1185 - -
Amo13g0107 1593 SUPERFAMILY Clavaminate synthase-like 103 357 - -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 1138 1153 - -
Amo13g0107 1593 Pfam jmjN domain 19 52 IPR003349 -
Amo13g0107 1593 SMART c2h2final6 1561 1587 IPR013087 -
Amo13g0107 1593 SMART c2h2final6 1478 1500 IPR013087 -
Amo13g0107 1593 SMART c2h2final6 1501 1525 IPR013087 -
Amo13g0107 1593 SMART c2h2final6 1531 1555 IPR013087 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 975 1045 - -
Amo13g0107 1593 SUPERFAMILY beta-beta-alpha zinc fingers 1541 1585 IPR036236 -
Amo13g0107 1593 MobiDBLite consensus disorder prediction 958 1069 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0107 Amo-Chr13 1564987 1573913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0107 1214 1592 C2H2 Transcription Factor Family AT3G48430 40.758 1.84e-71 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g0107 JmjC 4.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0107 - - adu:107478986 2945.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0107 13 1564987 1573913 Amo13g0107 13 1564987 1573913 ECH