Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0102 TTCAAACCCAGCATCAACATATACATTATTGTTATTATGATGATATCAAGAAGCATTCTATTCTCTTTGGTTTTCTTGGTTTTCTCTTTTCTCATCCCTACCTTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGTTCAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTGTTAGCTAGTGATAGGAGAAACTTAGGGTACCTTTCATGTGGAAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGATCCTAATTGGGAACAGAACAGACAGAAGCTAGCCGACTGCGCAATTGGGTTCGGAAAGAACGCAATTGGTGGTCGAGATGGTAAGATTTACGTGGTAGATGATTCTGGAAATGATGATCCAGTAAACCCTAAACCCGGAACCCTACGCCATGCAGTGATTCAGGATGAGCCGTTATGGATTATATTCGCTAAGGATATGATAATCACACTGAAAGAAGAATTAATTATGAATTCTTACAAGACAATTGATGGAAGAGGAGCTAGTGTACACATTGCTAATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGTGACTCTCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGGCCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCAATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGCTTGGTCATAGTGATGAATATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCACGTGGTGAATAATGACTATACACATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCTACCATTAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTAACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGGGACATGCTTGTTAATGGTGCATTCTTCACAGCTTCTGGTGCTGGTGCTTCTTCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCTAGACCCTCTTCTCTTGTTGCTTCTATTACTACTTCTTCTGGTGCCCTTCTTTGCAAGAAAGGTTCTCCATGCTGA 1290 0.4256 FKPSINIYIIVIMMISRSILFSLVFLVFSFLIPTFISSSPVQDPELVVQEVNRQINASIARRSLLASDRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQKLADCAIGFGKNAIGGRDGKIYVVDDSGNDDPVNPKPGTLRHAVIQDEPLWIIFAKDMIITLKEELIMNSYKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGAHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAESEWKNWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTSSGALLCKKGSPC* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0102 429 PANTHER PECTATE LYASE 19 426 - -
Amo13g0102 429 Pfam Pectate lyase 162 346 IPR002022 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 227 248 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 371 395 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Amo13g0102 429 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Amo13g0102 429 Gene3D - 80 422 IPR012334 -
Amo13g0102 429 PANTHER PECTATE LYASE 18-RELATED 19 426 IPR045032 GO:0030570
Amo13g0102 429 SUPERFAMILY Pectin lyase-like 81 420 IPR011050 -
Amo13g0102 429 SMART amb_all 155 352 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0102 Amo-Chr13 1509220 1512718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0102 13 429 Polysaccharide Lyase AT5G63180 77.566 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0102 K01728 - gmx:100787082 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1552 11 64728908 64731172 Amo13g0102 13 1509220 1512718 ECH
Amo13g0102 13 1509220 1512718 Amo13g0102 13 1509220 1512718 ECH