Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0089 ATGGAGCTTGATCTCCACCCTTCAGACCTCACCGCCTTTAAAACCCTCCAAAGAGACCTTGGTCTCAATGCACTTTTAGTCAACGGTCAACGCTTCCACCCATGCACCATCGATGGTGTGTTCTGCGAGAGAAGGCTCTCCACCAACGACACCGCCACAGCCACCTACGTCCTCCGCATCACGCGCCTTCTTTTCACCTCCAAGAATCTCAATGGAACCCTCTCTTCCGCCATTGGACACCTCACTGAGCTTAAAGAACTCTCTTTATCTGATAACCACCTCGTTGACCGCATCCCAAACTCCATAGTCAACCTCAAGAAGCTCGAAATCCTCGACCTCCGTGGCAACGGCTTCTCCGGCGAAGTCCCGCCTCGCCTTTCTTCGCTCGCAAGGCTCCGAGTCCTCGATGTCTCCTCCAACAAACTCTCCGGCAACCTCAACTTCCTCAAGTATTTTCCGAACTTGGAAAAGCTTAACGTCGCCGACAACCTCTTCGTTGGTCGTGTCCCGGTTTCCGTTCGCTCGTTTCGGAACCTCAGACACTTCAACTTCTCCGGCAACAGTTTCCTCGAAGGCTCGACGCCGATTGTCCCACGACGCTTCATCTTCGCCGAGGACGACGGAGAGAGCAACGACGGCATAACCGCTCTCGCGCCATCTCCGAGATCAAACAAAAGGAGGAGGAGGAGCTACTTTCCCAGCGCTTCTTCTCCGGCTCCCGGACCGGCACCCAACCACCATCACCACCACAATCACAGGAGAAAGATTCTCGGATGGATACTCGGTTTTCTTGCCGGAGCATTTGCCGGAATAATATCCGGTTTCATATTCTCATTGCTTTTCAAACTGACAAAGGCGTTACTGAAAAGAGGAGGCAAACGCGCCGGCGGCCCTGATATCTTCAGTCCTCTGATCAAGAAAGCCGAAGATTTGGCATTCTTGGAGAAAGAAGATGGTTTGGCGAACTTGGAACTCATCGGAAAAGGTGGCTCCGGCGAGGTTTACAAGGCGGAGTTGCCAGAAAGCGACGGAAAAATGATTGCCATAAAAAAAATCATCCAACCACCGAAGGATGCAACTGAAATGGAAGAAGAAGAAAGCAGAGACTTACACAAAAAAATGAGACAAATCCGATCAGAGATCAACACAGTCGGCCATATCAGACACCGGAATCTGTTACCCCTTCTTGCTCATGTTTCCCGCCCTGATTGCCACCTCTTGGTTTACGAATACATGAAGAATGGAAGCTTACAAGATTTGTTAAACAAAATTCAAGATGGAAATCAGGAACTGGATTGGTTATCAAGGCACAAGATCGCCATTGGAGTTGCTTCTGGACTTGAGTACCTTCACATGAGTCATAGTCCAAGAATCATTCACAGAGATCTCAAACCAGGAAACATTCTTCTTGATGATGATATGGAAGCTAGGATCTCCGATTTCGGTCTTGCAAAAGCAATGCCTGATGCTCAAACTCACATTACTACTTCCAAAGTTGCTGGTACAGTTGGTTATATTGCACCAGAGTATCACCAGATTCTTAAATTCACTGATAAGTGTGACATTTTCAGCTTTGGGGTGGTGCTTGGAGTTTTAGTGACGGGAAAACTTCCCTCTGATGACTTCTTCCAACACACGGATGAGATGAGTATAGTGAAATGGATGAGGAAGGTTATCATCTCGGAGACTCCAAAGGAAGCCATTGATGAGAAGCTTCGTGGGAATGGTTTTGAGGAGCAAATGCTTCTTGTTCTTAAGATTGCATGCTTTTGCACTATGGATGATCCTAAGGAGAGACCTAATAGCAAGGAAGTTAGGTGTATGTTAACTCAAATCAAGCATGATGACATGAATCTCTCTTAA 1863 0.4772 MELDLHPSDLTAFKTLQRDLGLNALLVNGQRFHPCTIDGVFCERRLSTNDTATATYVLRITRLLFTSKNLNGTLSSAIGHLTELKELSLSDNHLVDRIPNSIVNLKKLEILDLRGNGFSGEVPPRLSSLARLRVLDVSSNKLSGNLNFLKYFPNLEKLNVADNLFVGRVPVSVRSFRNLRHFNFSGNSFLEGSTPIVPRRFIFAEDDGESNDGITALAPSPRSNKRRRRSYFPSASSPAPGPAPNHHHHHNHRRKILGWILGFLAGAFAGIISGFIFSLLFKLTKALLKRGGKRAGGPDIFSPLIKKAEDLAFLEKEDGLANLELIGKGGSGEVYKAELPESDGKMIAIKKIIQPPKDATEMEEEESRDLHKKMRQIRSEINTVGHIRHRNLLPLLAHVSRPDCHLLVYEYMKNGSLQDLLNKIQDGNQELDWLSRHKIAIGVASGLEYLHMSHSPRIIHRDLKPGNILLDDDMEARISDFGLAKAMPDAQTHITTSKVAGTVGYIAPEYHQILKFTDKCDIFSFGVVLGVLVTGKLPSDDFFQHTDEMSIVKWMRKVIISETPKEAIDEKLRGNGFEEQMLLVLKIACFCTMDDPKERPNSKEVRCMLTQIKHDDMNLS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0089 620 Pfam Protein kinase domain 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0089 620 ProSitePatterns Protein kinases ATP-binding region signature. 326 351 IPR017441 GO:0005524
Amo13g0089 620 SUPERFAMILY Protein kinase-like (PK-like) 316 612 IPR011009 -
Amo13g0089 620 SMART serkin_6 320 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0089 620 ProSiteProfiles Protein kinase domain profile. 320 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0089 620 Gene3D Phosphorylase Kinase; domain 1 309 411 - -
Amo13g0089 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 52 614 - -
Amo13g0089 620 Gene3D Ribonuclease Inhibitor 10 198 IPR032675 -
Amo13g0089 620 Pfam Leucine Rich Repeat 84 105 IPR001611 GO:0005515
Amo13g0089 620 SUPERFAMILY L domain-like 32 191 - -
Amo13g0089 620 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 614 - -
Amo13g0089 620 Gene3D Transferase(Phosphotransferase) domain 1 412 619 - -
Amo13g0089 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Amo13g0089 620 CDD STKc_IRAK 326 612 - -
Amo13g0089 620 MobiDBLite consensus disorder prediction 212 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0089 Amo-Chr13 1208259 1211637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0089 3 614 Receptor kinase-like Gene Family AT2G31880 62.075 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Amo13g0089 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0089 - - aip:107629358 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0089 13 1208259 1211637 Amo13g0089 13 1208259 1211637 ECH