Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0049 ATGAGACAATTCGGTGGGCTGAGGGAGAGAGACCAACGGACTAGGCTTGCTGTTGCAACTCCTGAGCGGGTTAGGTCTGACCCGGAACCAATGCTAACCCAGAAGGCACCTCCTAACCTGGATCATGTTGGTGAGAGCACGGCGCCTGCAACCTGCGGTATGACAGCTACTGGGAAGTGCCGCGGGGGGGAGGAGGCCAGTCAACTCCACGCGTCGGTGCCTCGGGAGACATGTGCAAGACCCATGAGGCAAGGGCAAAAATCATCGGTTGCGCATCACGAGCCTGGGCGCGCGGGTGATGCGAAGGGGACCGTGGAGCTGCGACACGGTAGGGAGGGGGCATTGGACCGCGATGCGAGATGGAGGCCGGAACACGGCAGGCGGTGGTTGCGGGGTCTGATGAAGGGACGAGCAGGGTTGTGGAAGCCACCGGTGAGGAATGGAGGAGGGGAAATCTTGATGGACGAATTGGCTCAGGCTATTGGTAATGGACTAGATAAGGAGCGCGGGACTGGTGTAGAATCAGATGCAGGGATGGAGAATGACTTGGAGAGTGCTCGTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTCGTTCATTGTGTTGGAAGGGCTGAAAGGGCTGGCTGTACTGGCACTGCTTATTCCTTAGCGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTTTGTCGAAGCCAATAAAAGTTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGACTGGAGTAATGTCGAAAATTGAACAGGCAATGGCAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTTAGATAGAGTTAGGAAAATTATTGATACTAATGTAGAATTGGAGTCATTGCAGAGAACATGTAACAATGCATTCCGTTTATATATGAATAAAAAACCCTTACCATCCAAGGAGTCTATTCGAAGAGCAAAGGATTTGCCACGTGAGGTTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTAGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATCTTGGAAGCTGCAGGGGGAAGCAGCTAA 1143 0.5031 MRQFGGLRERDQRTRLAVATPERVRSDPEPMLTQKAPPNLDHVGESTAPATCGMTATGKCRGGEEASQLHASVPRETCARPMRQGQKSSVAHHEPGRAGDAKGTVELRHGREGALDRDARWRPEHGRRWLRGLMKGRAGLWKPPVRNGGGEILMDELAQAIGNGLDKERGTGVESDAGMENDLESARGIDIPLLDNVINWDFPPKPKIFVHCVGRAERAGCTGTAYSLATSEDMAYLLDLHLFLSKPIKVAPTEEEVLQNMTGVMSKIEQAMANGETVYGRFPQTVLDLVLDRVRKIIDTNVELESLQRTCNNAFRLYMNKKPLPSKESIRRAKDLPREVLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAAGGSS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0049 380 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 186 259 IPR001650 -
Amo13g0049 380 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 185 377 - -
Amo13g0049 380 MobiDBLite consensus disorder prediction 1 42 - -
Amo13g0049 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 261 IPR027417 -
Amo13g0049 380 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 185 377 - -
Amo13g0049 380 MobiDBLite consensus disorder prediction 1 22 - -
Amo13g0049 380 Pfam Helicase conserved C-terminal domain 186 220 IPR001650 -
Amo13g0049 380 Gene3D - 185 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0049 Amo-Chr13 825843 831176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0049 186 253 Eukaryotic Initiation Factors Gene Family AT1G72730 36.765 1.57e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0049 K14808 - gmx:100817417 318.931