Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0043 ATGGAACTTGTCTCAGTTCTAAAGCAATTGTCAAATGAGGAAAACTCAACTCTTTACGTATCAATATTATTTGGCATCGTTATCATCACTATCTTCTTGTTTCTTAATTTCACAAGGAAAAAAAACAATCAAAACCTTCCTCCATGCCCACCAAAGCTACCTTTCATTGGAAATCTTCATCAACTAGGAACACTTCCACACCGTTCCTTCCATGAGCTCTCCAAAAAGCATGGCCCTCTAATGTTGTTGGAGTTGGGACAAGTCCCAACTCTAGTGGTTTCGTCTGCAGACGTGGCCAAAGAAATCATCAAGAATCATGATGTTGTTTTCTCCGATAGGCCCCAAACTACGGCTGCAAATATTTTTACCTATGGATGTAAGGATGTGGGTTTTGCACCGTATGGTGAAGAGTGGAGACAAAAAAGAAAAATTTGTGTTCTTGAACTTTTAAGCGTCAAAAGAGTTTGTTCTTTTTGCTTTGTTCGTGAACAAGAGGTTGCCGAACTGGTGGGTGGAATACGTGAATCATATGTAAGAAACAAGGGATCTTGTGTGAATCTAAGTGAGTTGCTAATTTCAACATCAAACAACATAGTATCAAGATGTATTCTTGGACAAAAGTATAATCCTCCAAAAGATTGTAACGACAAAAATTTCGGAGAGCTTGGAAGAAAATTGATGAGACAATTTTCGTGTTTCAGTGTGAAAGATTTCTTCCCTTCATTTGGTTGGATTGATTCTGTTAGAGGTTTGATATCAGAAATGAATGCTACTTCTATAGCATTTGATTCTTTCTTAGAAGATGTAATTGAAGAACACATCATWAGGAGAAGGAATAAAGAGAAGAAGAAAGGTGATGATCATTTTGAGAAGAAAGACTTTGTTGATATACTTCTTGAACTTCAAGAGAATAATATGCTTCAGTTTGAGGACTCTCAAGATAACTTGAAAGCAATCTTAGTGGACATGTTTGTTGGAGGAAGTGATACTACCTCAACAACTCTAGAATGGACTTTTGCTGAYCTCCTCAAGAATCCAAAAGCCATGAAGAAAGCTCAAGAAGAGGTAAGGAGAATTGTGGGGAGAAAATCAAAAGTGGAAGAAAATGATGTGAATCAAATGAACTATTTGAATTGTGTGATCAAAGAAACTCTAAGATTGCATCCTCCAGTTCCTCTCTTAGTTCCTAGGCAAACAACTTCAAGTGTGAAAGTACAAAYTTTCAATATTCCTCCAAAAACTAGAGTGTTTATAAATGCTTGGGCGATTCAAAGAGACCCAAAATTGTGGGAGGAGGCTGAAGAGTTCATTCCTGAGAGATTTGAAAACAACCAAGTTGATATAAAAGGGTTGGATTTTCAATTAATACCATTTGGTGTTGGGAGAAGAGGTTGTCCTGGAATTTCSTTTGGMCTTGTTTCTACCGGATATGTTCTTGCTAATCTTCTATATTGGTTTGATTGGAAGCTGCATGGTGAAGATGAAGGTGACATAGACATGGATGAAATGTGTGGACTCACTGTTAGTAAGAAAGTCTCACTCCATCTTCAACCCATACCATACTCTCTTAGTTCTTAG 1578 0.372 MELVSVLKQLSNEENSTLYVSILFGIVIITIFLFLNFTRKKNNQNLPPCPPKLPFIGNLHQLGTLPHRSFHELSKKHGPLMLLELGQVPTLVVSSADVAKEIIKNHDVVFSDRPQTTAANIFTYGCKDVGFAPYGEEWRQKRKICVLELLSVKRVCSFCFVREQEVAELVGGIRESYVRNKGSCVNLSELLISTSNNIVSRCILGQKYNPPKDCNDKNFGELGRKLMRQFSCFSVKDFFPSFGWIDSVRGLISEMNATSIAFDSFLEDVIEEHIIRRRNKEKKKGDDHFEKKDFVDILLELQENNMLQFEDSQDNLKAILVDMFVGGSDTTSTTLEWTFADLLKNPKAMKKAQEEVRRIVGRKSKVEENDVNQMNYLNCVIKETLRLHPPVPLLVPRQTTSSVKVQXFNIPPKTRVFINAWAIQRDPKLWEEAEEFIPERFENNQVDIKGLDFQLIPFGVGRRGCPGISFGLVSTGYVLANLLYWFDWKLHGEDEGDIDMDEMCGLTVSKKVSLHLQPIPYSLSS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0043 525 SUPERFAMILY Cytochrome P450 47 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 Coils Coil 349 369 - -
Amo13g0043 525 Gene3D Cytochrome P450 34 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PANTHER CYTOCHROME P450 71B11-RELATED 16 520 - -
Amo13g0043 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Amo13g0043 525 Pfam Cytochrome P450 47 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g0043 525 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 16 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0043 Amo-Chr13 758392 762212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0043 18 521 Cytochrome P450 AT3G48280 41.700 1.28e-139 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0043 K20617 - gmx:100792382 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0043 13 758392 762212 Amo13g0043 13 758392 762212 ECH