Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0036 ATGGAAGAAGAAGATGACGTCACAGCCACAGCCACAAACCAAAACCTTCAAACTCATCAAAACGGCGTCGTTCCTTCCTCTCCCATGATTCCCGTTCCCGACGACAAGATCGTTCTCCCTGTTGAGGTCTGCTTGAAGCCTTCCAGCACTGCTTCTATCCGTGACGTTCGTTCCGCTATCGAAAGGATGCTTGAGAAGAGGAGTTTGAGCTATTGTGATGGCCCCATTCCTCTCCCCATGGACGAACCCTTTCTCGCCGACAACGTCCACAGAATTTGTATTTGTGACACAGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCAGTTGTCCATGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGAGTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGTTTAATATTCGAATCTGGTCTAAAGCAAAGGTTGTTACGTTATGCAGCTAGTGCTTTGCTCTTTACTGAAAAAGGTGTTGATCCATTCCTTGTTTCATGGAATCGTATAATTCTTCTACATGGACCCCCTGGGACTGGAAAGACTTCGTTATGTAAAGCATTAGCTCAGAAATTATCGATTCGATTCAATTCAAGATTCCCACAGTGCCAGCTTATTGAAGTGAATGCACATTCTTTATTCAGTAAATGGTTTTCTGAAAGTGGCAAGCTGGTTGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCGGCCAGGAAAGCTGCTATATCCGGTTCAGAACCTTCAGATTCTATTCGGGTTGTAAATGCATTACTAACTCAGATTGACAAGTTAAAATCGTCTCCAAATGTGATAATCCTAACCACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTCGACCGAGCTGATATTAAAGCATATATTGGTCCCCCGACACTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAATTGATGCGTACGGGGATCTTAACTAGTTTACAGGGTTGTGATAACATCACACTTCCAAGTTATGCCAGTGCAAAGGATAGGTCGAGTGCACCGGATTTTCATGAGGTTACTGCATCCATGCAACTATGCAACCAACTTCTTGAAACTGCCAAGGCCTGTGAGGGAATGAGTGGGAGGTCCTTGAGAAAGCTTCCATTTTTGGCACATGCTGCCCTTGCCAATCCTTTCGATTGCAATCCTATCAAGTTCTTATGTACAATGATTGAAACGGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1365 0.433 MEEEDDVTATATNQNLQTHQNGVVPSSPMIPVPDDKIVLPVEVCLKPSSTASIRDVRSAIERMLEKRSLSYCDGPIPLPMDEPFLADNVHRICICDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAAISGSEPSDSIRVVNALLTQIDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYIGPPTLQARYEILRSCLQELMRTGILTSLQGCDNITLPSYASAKDRSSAPDFHEVTASMQLCNQLLETAKACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIETAKRERSELPD* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0036 454 SMART AAA_5 188 340 IPR003593 -
Amo13g0036 454 MobiDBLite consensus disorder prediction 8 25 - -
Amo13g0036 454 Gene3D - 131 355 IPR027417 -
Amo13g0036 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 422 IPR027417 -
Amo13g0036 454 MobiDBLite consensus disorder prediction 1 27 - -
Amo13g0036 454 ProSitePatterns AAA-protein family signature. 310 329 IPR003960 GO:0005524|GO:0016887
Amo13g0036 454 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 306 320 IPR001270 GO:0005524
Amo13g0036 454 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 192 210 IPR001270 GO:0005524
Amo13g0036 454 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 30 451 IPR044539 -
Amo13g0036 454 Pfam ATPase family associated with various cellular activities (AAA) 192 337 IPR003959 GO:0005524|GO:0016887
Amo13g0036 454 CDD AAA 190 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0036 Amo-Chr13 678226 682968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0036 192 365 Calmodulin-binding Proteins AT3G56690 29.545 1.14e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0036 K22399 - gmx:100795009 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0036 13 678226 682968 Amo13g0036 13 678226 682968 ECH