Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0025 ATGGAAACGAGTCCCGGCCGTACGATTAAGCTCCTCTGCAGCTACGGCGGCAAGATCCTCCCACGCGCTACCGACGGCGAGCTCCGTTACATCGGTGGCCACACCAGAGTCCTCACCGTGGATCGTTCCATTTGCTTCTCAGACTTGTTGGTAAAGCTAGGAGAGTTGTGCGGTTCGTCTGTGACGTTACGGTGTCAATTGCCGAACGGAGACTTAGAAACCTTGATCTCCGTCACCAACGACGAAGATCTGACGCACATAATCGAAGAATATGACCGCGCTTCGTCGAAACTACCTCATCCGTTGAAGATCAGAGCCGTGCTGTTTCCGCCAAAATCGTCTAAGAAGGTTTCTCCGGCGACGTCGTCTCCGTCGTTGTCTTCCTCTGCTTCATCCAGCGCCAGTCACTCGCCAGCAAGATCTCCGTACACCTCCGCAGAATCGCTGCCGCATGTGGCGGCGTATCGCGTCGTCCGCCAAAGCCGTCCTGTCCCGATCCTAATTACTGCCATTGAAGCGGAAGCTTTAGAGTTATGCACATTTGATAAAATTTTGGATCTGGTTGAGGTTCTAATTTTAAAAACGAGCTTCAGTTCTTTTCTTCCTTGGGCTTCATTGGCTTTGGAACTCTTCTTTGTCCCTGAACCAGTCAGGGGTCCGTTACCGTTACCGTCAATAATCTTGTTTGGTGTGCTTGAGGGGGCGGATATAGATGCTTGTGGCGTGTGGGAAGAGGACAAAAGAGGATTGAACCTTCAAGAAATTTGTTAG 771 0.511 METSPGRTIKLLCSYGGKILPRATDGELRYIGGHTRVLTVDRSICFSDLLVKLGELCGSSVTLRCQLPNGDLETLISVTNDEDLTHIIEEYDRASSKLPHPLKIRAVLFPPKSSKKVSPATSSPSLSSSASSSASHSPARSPYTSAESLPHVAAYRVVRQSRPVPILITAIEAEALELCTFDKILDLVEVLILKTSFSSFLPWASLALELFFVPEPVRGPLPLPSIILFGVLEGADIDACGVWEEDKRGLNLQEIC* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0025 256 CDD PB1_UP2 12 109 - -
Amo13g0025 256 PANTHER PB1 DOMAIN PROTEIN 7 173 - -
Amo13g0025 256 PANTHER OS05G0427100 PROTEIN-RELATED 7 173 - -
Amo13g0025 256 MobiDBLite consensus disorder prediction 115 144 - -
Amo13g0025 256 Gene3D - 30 107 - -
Amo13g0025 256 SUPERFAMILY CAD & PB1 domains 25 118 - -
Amo13g0025 256 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Amo13g0025 256 MobiDBLite consensus disorder prediction 113 144 - -
Amo13g0025 256 SMART PB1_new 23 109 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0025 Amo-Chr13 622630 624028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0025 9 119 MAP Kinase Kinase Kinase AT1G04700 46.847 2.33e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0025 - - gmx:100797123 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0025 13 622630 624028 Amo13g0025 13 622630 624028 ECH