Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0018 AGTCTTCAGCAGCACAGGAAGCACCGCGAAGTTGTAGGAGGCGCCTTCAGAAAGTTTTGGCGCGTTCTACCTGTTGATAACGTTACACCATTGCCCACCGCCTCAAGCATGAGTTCTCCAGGATCATCCTCAACCTCAAGAGTTTCAGTAGAAGRGCAAGCCCCATTGCCAAAGCCAGCTGATCCTGCAGCAAACTTATCGAGCAATGAGATTGCACCACTTTCAAGAAATCCATTCTTTCATGTAGTTCTTTCAAAATCACATGTTCGTCGTAGTTGTCTCATGGGGCCATCAAAGGACTTAATAGATATACTTCCATCTGCTGAGGTCCCTACTGTTCTTAAGTGTGGAGGCGAGAGCTGGGACATGGTGTATCGTGGACATGCTCCGGGTCGCAAGTTCTTCGATGGAGGCTGGAGAAAATTTGTCAAAGCTAATTGCTTGGTGGAGGGAGATGCTTGTGTTTTCGAGCTCATGGCAAACAGTGATGAGAAAATTGTCTTTGAAGTTCAAATTCTCAGAGGTGATCTCCCCGAAGTGTTTTTTAAAAGGGATAGAATTGGTGCAAGTGAACAGAAGCCGATTGTCATTGACTAG 597 0.4606 SLQQHRKHREVVGGAFRKFWRVLPVDNVTPLPTASSMSSPGSSSTSRVSVEXQAPLPKPADPAANLSSNEIAPLSRNPFFHVVLSKSHVRRSCLMGPSKDLIDILPSAEVPTVLKCGGESWDMVYRGHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEVQILRGDLPEVFFKRDRIGASEQKPIVID* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0018 198 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 42 181 - -
Amo13g0018 198 Pfam B3 DNA binding domain 80 169 IPR003340 GO:0003677
Amo13g0018 198 CDD B3_DNA 78 174 IPR003340 GO:0003677
Amo13g0018 198 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 181 IPR044837 -
Amo13g0018 198 SMART B3_2 80 176 IPR003340 GO:0003677
Amo13g0018 198 ProSiteProfiles B3 DNA-binding domain profile. 79 176 IPR003340 GO:0003677
Amo13g0018 198 MobiDBLite consensus disorder prediction 31 51 - -
Amo13g0018 198 MobiDBLite consensus disorder prediction 31 68 - -
Amo13g0018 198 Gene3D - 63 176 IPR015300 -
Amo13g0018 198 SUPERFAMILY DNA-binding pseudobarrel domain 75 174 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0018 Amo-Chr13 248675 251348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0018 77 174 REM Transcription Factor Family AT1G49480 36.634 1.10e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo13g0018 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0018 - - adu:107474771 302.367