Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0016 ATGCAAGAAGCAGGTGAAATTATATTTGTTCCCAGTGGATGGTACCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCGTATAACCTTTCATGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAAGAATACATAGAAGACATCAAGGATGTATGTGAGGATTTCGAAGGTCTTTGCCAGCGCAATCTTGCTGCTAACACGGGGATGAACTTTTATGACTTCTTTACTTTCATATCACGCTTCACCTTGGCCAACATTGTCTTGCTTTGTTATATAAATGGAAGACATGGAAATATCACTCAAATCTCATCAACAATAGCTCAGCATTTATTGATGAATCTTGGATCCATAAGGAAGGTTGCATCGGAGATGAAAGACAGGCATGCTCTAAAAGGGAATCAGGATCGCGCTGTGGACATTATAGAAACACTTGAAGATCCTAGGTTTTGCAAATTGTGCATGGATATAGGAAGAACATATGCAATGATACATGAAGAGTCTCATTTGTCCTTTGATTTCGAGAGCGCTTCGGCTGGTGAAATAGCGGATCTCACTGTTTTGAAAGCATACACTTCATCTGAGTTCTACACACCTGAAGATCTTGTTGAATTTATAGACAATGCTGTTGCAGAACATGGTGACTGTTACATCAACTCATCTGTAATATGA 699 0.3906 MQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCEDFEGLCQRNLAANTGMNFYDFFTFISRFTLANIVLLCYINGRHGNITQISSTIAQHLLMNLGSIRKVASEMKDRHALKGNQDRAVDIIETLEDPRFCKLCMDIGRTYAMIHEESHLSFDFESASAGEIADLTVLKAYTSSEFYTPEDLVEFIDNAVAEHGDCYINSSVI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0016 232 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 2 221 - -
Amo13g0016 232 ProSiteProfiles JmjC domain profile. 1 48 IPR003347 -
Amo13g0016 232 Pfam JmjC domain, hydroxylase 2 31 IPR003347 -
Amo13g0016 232 Gene3D Cupin 1 33 - -
Amo13g0016 232 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 221 - -
Amo13g0016 232 SUPERFAMILY Clavaminate synthase-like 2 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0016 Amo-Chr13 233038 234449 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g0016 JmjC 1.4e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0016 - - aip:107623961 470.314