Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0012 ATGGCTAAGGGTCAATCCTCATCTTCTGATCATGAGGAACTTGAACTTGTAAATCAATCAATGATGATAATTCTGTTGTTACTTTGCATCCTGATACCATGGAAAAGCTCAATTTTTTCCGAGGGGATACTGTTCTGGTTAAGGTACGGGAAGAAGAGAAAGGACACTGTTTGCATTGTTCTTGCTGATGATCAGTGCGAAGAGCCGAGAATTCGGATGAACAAAGTTGTAAGGTCTAATCTTAGGGTTAGGCTTGGAGATGTTGTCTCTGTTCATCAATGTTCTGATGTCAAGTATGGGAAGCGAGTTCACATCCTTCCCATTGATGATACTATCGAGGGTGTCACTGGCAACTTGTTTGATGCATATCTCAAGCCATATTTTATGGAGTCGTACCGACCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGAGGCGGAATGCGAAGTGTTGAATTCAAGGTGATAGAAACTGATCCTGGTGAATATTGTGTCGTGGCACCGGATACTGAAATCTTCTGCGAGGGAGAGCCGATTAAACGCGAGGATGAAGAGAGACTAAATGAAGTTGGCTATGATGATGTTGGGGGTGTTAGGAAGCAAATGGCTCAAATTCGTGAGCTCGTAGAACTTCCACTCAGGCATCCGCAACTCTTCAAATCGATCGGTGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCGCCAGGTTCCGGGAAGACTCTGATTGCAAAAGCAGTTGCTAATGAGACAGGTGCGTTCTTCTTTTTGATCAATGGACCGGAAATCATGTCGAAGCTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCCGAAAAGAATTCCCCTTCTATCATTTTTATTGATGAATTGGATTCAATTGCTCCAAAAAGAGAAAAGACACATGGTGAGGTAGAGAGGCGTATAGTATCGCAACTTTTGACTCTAATGGATGGCCTCAAGACCCGTTCGCATGTTATTGTGATCGGAGCAACAAATAGGCCCAACAGTATTGATCCTGCTTTGAGAAGGTTTGGAATGTTTGATCGCGAAATTGATATCGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACTAAGAACATGAAGCTTTCTGATAATGTTGATCTTGAAAGAGTTGCAAGGGACACTCATGGTTATGTAGGAGCAGATCTTGCTGCTCTATGCACAGAGGCTGCGCTGCAGTGTATAAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAATCAATAGATGCTGAGATTCTGAATTCCATGGCTGTCACCAATGAGCACTTCCAAACTGCTTTGACTTCTTCGAACCCGTCTGCGTTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGTCTAGAGAATGTTAAAAGGGAGCTTCAAGAGACGGTTCAATACCCGGTGGAACATCCTGAGAAGTTTGAGAAATTCGGCATGTCGCCTTCCAAAGGTGTTCTTTTCTATGGCCCTCCGGGCTGCGGCAAAACCCTGCTTGCAAAAGCTATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTCAAGGGACCTGAGTTGCTTACTATGTGGTTCGGTGAAAGTGAGGCAAACGTTCGCGAGATATTCGACAAGGCCCGGCAGTCTGCACCATGTGTGCTTTTCTTTGATGAACTCGACTCTATTGCAACCCAGCGAGGAGGTTCAAGAGGGGATTCCGGCGGTGCTGATAGAGTGTTGAACCAACTACTAACAGAGATGGATGGAATGTCTGTTAAGAAAACAGTGTTCATCATTGGAGCAACAAACAGACCTGACATTATAGACCCTGCATTGCTTCGACCAAGACGTCTTGACCAATTGATATACATTCCTTTACCGGATGAGAGTTCACGTCTCCAGATCTTCAAGGCGTGCTTGAGGAAGTCACCAATCTCGAAGGACGTCGATCTTTCGGCTCTTGCTCGTTATACACATGGATTTAGTGGTGCAGACATTACTGAGATTTGTCAAAGAGCTTGCAAGTATGCCATTAGAGAAGATATTGAGAAGGACATTGAGATGGAGAGAAGAAAAATAGAGAGCCCTGAAGCCATGGAAGAAGATAATGAAGACACTGATGTAGTGGCTGAGATAAAACCATCACACTTTGAGGAGTCCATGAAGTTTGCTCGGAGGAGTGTCAGCGACGCCGACATCAGAAAATACCAACTGTTTGCTCAGACATTGCAACAGTCTCGCGGGTTCGGATTGGAGTTCCGGTTCGCAGATCGGACTACTGATACCACTTCTGCTGCTGGTGCCTCTGACCCTTTCTCATCTGCTACAGCTGAAGGAGATGATGATCTATATGGTTAA 2382 0.4479 MAKGQSSSSDHEELELVNQSMMIILLLLCILIPWKSSIFSEGILFWLRYGKKRKDTVCIVLADDQCEEPRIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGMFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSRGDSGGADRVLNQLLTEMDGMSVKKTVFIIGATNRPDIIDPALLRPRRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLSALARYTHGFSGADITEICQRACKYAIREDIEKDIEMERRKIESPEAMEEDNEDTDVVAEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGLEFRFADRTTDTTSAAGASDPFSSATAEGDDDLYG* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0012 793 CDD AAA 468 634 - -
Amo13g0012 793 Gene3D - 452 634 IPR027417 -
Amo13g0012 793 SUPERFAMILY Cdc48 domain 2-like 96 188 IPR029067 -
Amo13g0012 793 MobiDBLite consensus disorder prediction 770 793 - -
Amo13g0012 793 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 48 766 - -
Amo13g0012 793 SUPERFAMILY ADC-like 49 94 IPR009010 -
Amo13g0012 793 PANTHER AAA-FAMILY ATPASE 48 766 - -
Amo13g0012 793 Gene3D - 194 358 IPR027417 -
Amo13g0012 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 450 IPR027417 -
Amo13g0012 793 Gene3D - 97 193 - -
Amo13g0012 793 Pfam Cell division protein 48 (CDC48), N-terminal domain 52 95 IPR003338 -
Amo13g0012 793 Gene3D - 360 451 - -
Amo13g0012 793 ProSitePatterns AAA-protein family signature. 604 622 IPR003960 GO:0005524|GO:0016887
Amo13g0012 793 ProSitePatterns AAA-protein family signature. 329 347 IPR003960 GO:0005524|GO:0016887
Amo13g0012 793 Pfam Cell division protein 48 (CDC48), domain 2 116 179 IPR004201 -
Amo13g0012 793 Gene3D - 38 96 - -
Amo13g0012 793 SMART AAA_5 225 361 IPR003593 -
Amo13g0012 793 SMART AAA_5 498 636 IPR003593 -
Amo13g0012 793 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 59 752 IPR005938 GO:0016787
Amo13g0012 793 SMART CDC48_N_2 21 97 IPR003338 -
Amo13g0012 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 749 IPR027417 -
Amo13g0012 793 CDD AAA 195 358 - -
Amo13g0012 793 Pfam ATPase family associated with various cellular activities (AAA) 502 634 IPR003959 GO:0005524|GO:0016887
Amo13g0012 793 Pfam ATPase family associated with various cellular activities (AAA) 229 358 IPR003959 GO:0005524|GO:0016887
Amo13g0012 793 Gene3D - 638 748 - -
Amo13g0012 793 Pfam AAA+ lid domain 381 423 IPR041569 -
Amo13g0012 793 Pfam AAA+ lid domain 656 697 IPR041569 -
Amo13g0012 793 SMART CDC48_2_2 114 180 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0012 Amo-Chr13 170176 174819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0012 431 700 Calmodulin-binding Proteins AT3G56690 47.601 1.77e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0012 K13525 - gmx:100798680 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0012 13 170176 174819 Amo13g0012 13 170176 174819 ECH