Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0001 ATGGAAGACGATTTCGAGTTCCCAGCTGCCGGCGGCAACAACTTCGACGATGACATGGAGATTCCCAACGAGGAGGAGGAGGTCGACTCTACGCTCAAGGTTGGGGACGAAAAGGAGATCGGAAAAACCGGCCTCAAGAAGAAGCTCGTTAAGGAAGGTGAAGGCTGGGAAACACCTTCAAAAGGAGACGAAGTTGAAGTGCATTACACGGGAACGTTGCTCGATGGAACCAAATTTGATTCGAGTCGTGACAGGGGTACACCTTTCAAGTTCAAGCTTGGCCATGGTCAAGTGATCAAGGGTTGGGACGAGGGAATCAAAACCATGAAGAAGGGTGAGAATGCCGTCTTCACGATTCCCCCAGAATTGGCCTATGGTGAATCTGGATCTCCTCCTACCATTCCTCCCAATGCAACTCTGCAGTTTGATGTGGAGTTGCTGTCTTGGACGAGCGTCAAGGACATTTGCAAAGATGGAGGAATACTCAAGAAGATTGTCACTGAAGGAGAGAAATGGGAAAATCCTAAGGATCTTGATGAAGTGCTTGTTAAATATGTGGCTAAGCTTGAAGATGGCATGGTTGTTTCGAAATCTGATAGGGTGGAGTTCACCGTGGAAGAAGGTTATTTCTGTCCTGCATTGGCCAAGGCTGTAAAGACAATGAAGAAGGGAGAGAAAGTCATCTTGACCGTGAAGCCGGAATATGCGTTTGGTGAGAATGGAAGGCCAGCATCAGGTGATGAAGGCGCTGTACCTCCGAATGCTTCGCTCCAAATTGATCTTGAGTTGATATCTTGGAAGGCTGTATCTGACATAACCAAGGATAAGAAGGTTCTAAAGAAGACCTTGAAGGAGGGAGAGGGGTATGAACGTCCCAATGATGGAGCTGTGGTTCAAGTGAAACTTATTGGTAAGCTGCAAGATGGGACTGTTTTTGTGAAGAAGGGTCATGATGATGAGCAGCCATTTGAGTTCAAAATTGACGAGGAGCAAGTAATTGATGGACTTGATAAAGCTGTGATGAACATGAAGAAAGGGGAAGTTGCATTGGTGACCATACATCCTGAGTATGCTTTTGGCTCATCTGGGTCAACTCAGGATTTGGCCACCGTTCCTCCCAACTCCAACGTGTACTATGAAGTTGAGCTGGTTTCCTTTGTAAAGGAAAAGGAATCGTGGGATCTGAATACACCAGAGAAGATAGAGGCAGCTGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAGGCCGGCAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCCATAAAGTACATTGAGTATGATTCCTCCTTCAGCGATGAGGAGAAACAGAAGACAAAGGTGCTAAAGGTCACATGCAATCTCAATAATGCAGCTTGTAAGCTGAAGCTCAAGGACTACAAACAAGCAGAGAAGTTGTGCACTAAGGTATTGGAGTTGGATAGTAGAAATGTGAAGGCACTATACCGGAGGGCACAAGCATATATTCAACTTGTGGATTTGGATCTGGCTGAAATGGACATTAAGAAAGCTCTTGAGATTGAACCAGACAACAGGGATGTGAAGATTGAGTACAAAATTTTGAAAGATAAAGTGAGAGAATACAACAAGAAGGATGCACAGTTCTATGGCAGCATATTTGCAAAGATGAACAAAATGGAACAAGCTAGAAGTGCTTCAGCAAAGCAGGAACCTGTGCCAATGGTTGTTGATAGCAAAGCTTAG 1731 0.4483 MEDDFEFPAAGGNNFDDDMEIPNEEEEVDSTLKVGDEKEIGKTGLKKKLVKEGEGWETPSKGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGHGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKKIVTEGEKWENPKDLDEVLVKYVAKLEDGMVVSKSDRVEFTVEEGYFCPALAKAVKTMKKGEKVILTVKPEYAFGENGRPASGDEGAVPPNASLQIDLELISWKAVSDITKDKKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFVKKGHDDEQPFEFKIDEEQVIDGLDKAVMNMKKGEVALVTIHPEYAFGSSGSTQDLATVPPNSNVYYEVELVSFVKEKESWDLNTPEKIEAAGKKKEEGNALFKAGKYERASKRYEKAIKYIEYDSSFSDEEKQKTKVLKVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKDKVREYNKKDAQFYGSIFAKMNKMEQARSASAKQEPVPMVVDSKA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0001 576 SUPERFAMILY FKBP-like 40 155 - -
Amo13g0001 576 Coils Coil 520 540 - -
Amo13g0001 576 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0001 576 Gene3D - 154 267 IPR046357 GO:0003755
Amo13g0001 576 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Amo13g0001 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 16 273 - -
Amo13g0001 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 289 384 IPR001179 GO:0003755
Amo13g0001 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 264 IPR001179 GO:0003755
Amo13g0001 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Amo13g0001 576 Gene3D - 36 153 IPR046357 GO:0003755
Amo13g0001 576 PANTHER PEPTIDYLPROLYL ISOMERASE 278 386 - -
Amo13g0001 576 PANTHER PEPTIDYLPROLYL ISOMERASE 387 557 - -
Amo13g0001 576 SMART tpr_5 404 437 IPR019734 GO:0005515
Amo13g0001 576 SMART tpr_5 453 486 IPR019734 GO:0005515
Amo13g0001 576 SMART tpr_5 487 520 IPR019734 GO:0005515
Amo13g0001 576 Pfam Tetratricopeptide repeat 488 520 IPR019734 GO:0005515
Amo13g0001 576 SUPERFAMILY TPR-like 399 553 IPR011990 GO:0005515
Amo13g0001 576 SUPERFAMILY FKBP-like 154 269 - -
Amo13g0001 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Amo13g0001 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Amo13g0001 576 PANTHER PEPTIDYLPROLYL ISOMERASE 16 273 - -
Amo13g0001 576 Gene3D - 268 389 IPR046357 GO:0003755
Amo13g0001 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 387 IPR001179 GO:0003755
Amo13g0001 576 SUPERFAMILY FKBP-like 270 404 - -
Amo13g0001 576 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
Amo13g0001 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 278 386 - -
Amo13g0001 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 387 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0001 Amo-Chr13 81042 84163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0001 23 576 Calmodulin-binding Proteins AT5G48570 74.865 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0001 K09571 - gmx:100819747 984.171