Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3546 ATGGTCGCGACTACCAATCTACATTACCAGCTGGGTTTGTTGTCCGATGAAGATTGTTGGTTGGTGTTTTCAAAACATGCAAGTCTTTCAACTGTTTCTGTGGAGAATTCAACCTTGGAAAAGATCGGCAGAGATATTGTAAAGAAATGTGATGGATTGCTCTTGGCAGCTCAAGCTCTCGGAAGCTTATTGTGTGGAAATTCTGATGTCAAGTACTGGAATCGTATATTGAAGAGCGAGATCTGGGAATTCTCCGATGACGAGATGAATGTTATTCCTGCATTAAGAATAAGTTATTATTATCTGCCTCCGGCGATAAAAAAGTGCTTTATTTATTGTTCATTGTATCCCAAGGATTATGAATTTGATAAAGATGAATTAGTCTTGTTATGGATGGCAGAAAATTTTTTACAGCCAATAGGTAAAAAGACTCTGGAAGAAGTTGGTGATGAATATTTTGATGAATTAGTTACGAGATCATTTTTTCATGCTCGTAATACCGATGAAAAGATATTTGTTATGCATGATCTCGTGCACGATATGGCAATGATGTTTGCTGGAGAGTTCTATTTCAGAGCTGAAGAGCTTCAGAATGCTACTGAGATTAATATTAAAACTCGTCATTTGTCACATAATGTTAAAGGCAATTATCCAATCTCAAAACTTTCGAGAGAATGTGACCGAGCGGAACATGCAAGGACATTTCTTGAAATCAAGTTGGTGCCATGGATCCCATTTGACATGGAAAACGCACCTTGTATCTTGTTGTCAAAGTTGAAGTTCCTGAGAGCGTTGTCATTCAAATGCTTTCCTCTTGAGTCACTGCCAGATTCAATAGGCGAGTTGATTCATTTGCGTTACTTGAATTTGTCTCAGACCTACATTGTGACATTGCCGGAGTCATTGAGTAAGCTGTATAACTTGCAGACCTTGAAGCTGGTTAGATGTGCAAATCTGAAAATGCTTCCTGTTGGCATGAAAGATCTTGTAAATTTGCGTCATCTTGATATCAGAGGGACTAGTTTGCATGAGATGCCGAAAGGCATGAGCAAATTAAAAAATTTGCAGTTCTTAAGTGATTACGTTGTTGGGAAGCATGAAGAGAACAAGATCAAAGAATTGGGAGCACTTGTCTATCTACACAAATCAATTTGCATTGACAAATTGGAGAATGTGGTGGACAGCACAGAAGCTTCGGAGGCAAGAATGTTTGATAAGGATGGCATTGATTCTTTGAGCTTGAGTTGGTCATCGGACAGAAACGAGAATATAATTGATTCCGAAATAGAAAGAGATATACTGGACAAGTTACGACCTCACAGTAATTTGAAAGAACTGGAAATGTGGGGTTACAGGGGTACAACTTTTCCAAATTGGTTGGGACATTCTTCCTACCGCAACATCACCAAAATTACACTGGGCAATCGATCCGTCGGTGGTTTTAAGAATTGTCGTATGCTTCCTTCACTTGGACAGTTACCCTCTTTGAAGCACCTATCAATTTCAGAGTTTGAAAGACTGGAGATTGTAGGTGCTGAGTTTTACTTCTGCCAGAAAGATACATGCTGTTTGGAGGCACCGACACCATTTCCAATGCTTGAAACTCTTTCGTTTACGTCAATGCGTTGCTGGAAGGAATGGCGTGCACTGGAGTACAATGCATTTCCTCGACTTAGGGAGCTTACCATAAGSYAYTGTCCKYTGTTGAGAGGAGATTTGCCYAATCATCTGCCATCWTTGCATTCACTTACTATTAAGGATTGCAGCAATCTCAGTTGCTGTGTTCCAGAAGCTCCTGCGATGACCTCTTTGAGCATAGAAGGCGGCAATAAAGTGAAAATTGGGGAGCTACCTCCCTTACTGTGTCATCTATCAATTTCAGGAAAGCATCTAGCGGATCCCGTGGTGGAGGCTATTACGAAGACGCAACTGACTTGCCTCACATATTTAGAGATCTCAAATTGTTCCTCCCACATCTGGTTTCCTGTGAGTGATATTCCCCCATCACTCCAAAAGTTGAGGATATGGGGTTGCAGAAAACTAGAATTCCAAGTGGAAGGCCAACACAACTCACTGCAGAAACTATGGATACGTAACAGCTGTGATTCAGTTACATCCTTCTCATTGGATGCCTTTCCAAATGTCAAGGAAGTTTATATCAGGGAGTGTGAAAAGATGGAGTCTATTGTGGTGTCTCGTTCTCTTTCATGTCTCCGTATTTTGACTATAGAGAGCTGTAGGAGTATGAAATCCATGTCAACGCTATGGATGGCAGCACCTCAGCTAGAACAGCTTCAAATACTGTGTTGCCCAGAGATGGATTTGTCTGCTACAGGAGATCCACACCGTAGTAGCCTGAGATTTCTTACCATCAGCTACAGCGAGAAACTAGTGAGTAGTGCAGCATTCATGAATTCCCAATTTCAAGGACTTACTCAGCTTTCTATTGGACGTGAATGTGAGAATGTGAAGTGTCTCCCAAAGGAAGTTAACGATTTATACATTCTCATACAGCTTATCCATGGACCCAACAAGATATCTTCTGCAGCTATGGTTTTGCTTTTGATGATTAATAATGTTCTTGACAAGATTCAAGGTGAGAGTGAAACTTTCTTCCAGAAAGCAATTCAGCAACAAGGGAGAGCAGCAATCATGGACACAATGCAAGAGATTCAAGAGAGGCATGACAATTTGAAATTATCAAATGATTTCACTTTAACTAAGAACAAGTAA 2733 0.404 MVATTNLHYQLGLLSDEDCWLVFSKHASLSTVSVENSTLEKIGRDIVKKCDGLLLAAQALGSLLCGNSDVKYWNRILKSEIWEFSDDEMNVIPALRISYYYLPPAIKKCFIYCSLYPKDYEFDKDELVLLWMAENFLQPIGKKTLEEVGDEYFDELVTRSFFHARNTDEKIFVMHDLVHDMAMMFAGEFYFRAEELQNATEINIKTRHLSHNVKGNYPISKLSRECDRAEHARTFLEIKLVPWIPFDMENAPCILLSKLKFLRALSFKCFPLESLPDSIGELIHLRYLNLSQTYIVTLPESLSKLYNLQTLKLVRCANLKMLPVGMKDLVNLRHLDIRGTSLHEMPKGMSKLKNLQFLSDYVVGKHEENKIKELGALVYLHKSICIDKLENVVDSTEASEARMFDKDGIDSLSLSWSSDRNENIIDSEIERDILDKLRPHSNLKELEMWGYRGTTFPNWLGHSSYRNITKITLGNRSVGGFKNCRMLPSLGQLPSLKHLSISEFERLEIVGAEFYFCQKDTCCLEAPTPFPMLETLSFTSMRCWKEWRALEYNAFPRLRELTIXXCPLLRGDLPNHLPSLHSLTIKDCSNLSCCVPEAPAMTSLSIEGGNKVKIGELPPLLCHLSISGKHLADPVVEAITKTQLTCLTYLEISNCSSHIWFPVSDIPPSLQKLRIWGCRKLEFQVEGQHNSLQKLWIRNSCDSVTSFSLDAFPNVKEVYIRECEKMESIVVSRSLSCLRILTIESCRSMKSMSTLWMAAPQLEQLQILCCPEMDLSATGDPHRSSLRFLTISYSEKLVSSAAFMNSQFQGLTQLSIGRECENVKCLPKEVNDLYILIQLIHGPNKISSAAMVLLLMINNVLDKIQGESETFFQKAIQQQGRAAIMDTMQEIQERHDNLKLSNDFTLTKNK* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3546 910 Gene3D - 13 97 IPR042197 -
Amo12g3546 910 Gene3D Ribonuclease Inhibitor 246 607 IPR032675 -
Amo12g3546 910 Pfam NB-ARC domain 8 99 IPR002182 GO:0043531
Amo12g3546 910 PANTHER OS05G0414200 PROTEIN 10 658 - -
Amo12g3546 910 SUPERFAMILY L domain-like 602 839 - -
Amo12g3546 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 113 IPR027417 -
Amo12g3546 910 Gene3D Ribonuclease Inhibitor 618 838 IPR032675 -
Amo12g3546 910 Pfam Syntaxin 865 899 IPR006011 GO:0016020
Amo12g3546 910 Coils Coil 219 239 - -
Amo12g3546 910 Gene3D - 98 184 IPR036388 -
Amo12g3546 910 PANTHER DISEASE RESISTANCE PROTEIN RP 10 658 IPR044974 GO:0006952
Amo12g3546 910 SUPERFAMILY L domain-like 173 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3546 Amo-Chr12 124901731 124905084 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3546 866 899 SNARE and Associated Proteins AT4G03330 70.588 2.53e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3546 - - ahf:112728742 1676.76