Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3544 ATGAACGACCTATTTTCCGGTTCCTTCTCCCGCTTGCGCAACGAGCGTACTTCACCGGACCGCCACCACGTCATCGAGATGTCTGCCGTCACGCCGGACGCTGCAGGCTCGGGCGGCGTCCACCTCGACAAGTTCTTCGACGATGTGGAAGGCGTTAAAGAGGAGCTTCGCGAAGTCGAGCGTCTTCTCCAGAGTCTCCAGAGCAGCCACGAGCAGAGCAAGACGCTTCACAACGCCGCCGCCGTGCGTGACCTCCGGTCGAGAATGGACGCCGACGTATCGGCGGCGCTGAAGAAGGCGAAGGTGATCAAGCTCCGCCTCGAGGCGCTGGACCGGTCCAACGCTGCGAACCGGAACCTGCCGGGTTGCGGACCGGGTTCGTCATCGGACCGGACGAGAACTTCGGTGGTTAACGGTTTGAAGAAGAAGCTGAAGGATTCGATGGAGAGCTTCAATGAATTGCGGCAGCAGATCTCGGCGGAGTATAGGGAGACGGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGAGAAGACGCTCGATCTCTTGATCTCTACTGGTGAGAGTGAGACATTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTCTTGACACCATCAATGAAATTCAAGAAAGGCATGATGCTGTCAAAGAGATCGAGAAGAATCTCAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGGTGCAAACACAGGGCGAGCAACTGGACGATATTGAGAGTCACGTGGCGCGAGCCCATTCGTTTGTGCACACCGGAACAGAGCGGTTGCAAACTGCAAGAAAGCACCAGAAGAACACCAGGAAATGGACCTGTTTTTGTATCATACTGCTTCTAGCGATTATCTTGGTAGTGTTGCTAGTGGTTCTGAAACCGTGGCAACATAATGGCAGCAGTGGTGGTGGAGCAACCATGAATGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAGCACCGATCAAGTCTCTCCGGACAACCAACACCATGTCATCGAGATGGGGGCGACCGACGGCAACGTCCACCTCGACAAGTTCTTCGAGGAAGTGGAGGTCGTAAAAGAGGAGCTGAAGGAGTTGGAGAAGCTCCATGAGAGCCTAAGACGCAGAGCCGTGAAAGATCTTAGAGCCAGCATGGACGCTGACGTGGCAATAGCACTAAAAAAGGCCAAGCTTGTCAAGGTCCGACTCGAGGCACTGGACAGGTCCAACGCAGCAAGCCGAAGCTTGCCTGGTGCTGGACCTGGGTCTTCCTCGGATCGGACCAGGACATCCGTGGTGAGTGGATTGAGGAAGAAGTTGAAAGATTCCATGGACAGCTTCAACAACCTTAGACAACAAATATCCTCAGAGTACAGAGAGACCGTACAACGTAGATACTATACTGTCACTGGAGAGAATCCTGATGAAAAAACCGTTGATCTTCTCATCTCTACTGGTGAGAGTGAAACCTTTTTACAAAAAGCAATTCAGCAACAGGGGAGAGCCACAATCATGGACACAATCCAAGAGATTCAAGAGAGGCATGACACAGTTATGGAGATAGAGAGGAGCCTCAATGAGCTTCACCAAGTGTTCTTGGACATGGCTGTTTTGGTCCAATCACAAGGTGAGCAAATAGATGACATAGAGAACCACGTGGCGAGAGCTAATTCGTATGTCCGCGGCGGGGTCCAGCAACTCCAGGTTGCAAGGAAGCACCAGAAGAATACCCGGAAGTGGACCTTAATTGCCATCATAATATTGATCATTATCATATTGATTATAGTTCTTCCTATTATTAGATTTTTGGTTTGGTTTCTACTTTCTAGAATCTCATGGTCATGGTCCTTTAGAAGATTCATGTTGATGCATTCTTTTGCATAC 1905 0.5139 MNDLFSGSFSRLRNERTSPDRHHVIEMSAVTPDAAGSGGVHLDKFFDDVEGVKEELREVERLLQSLQSSHEQSKTLHNAAAVRDLRSRMDADVSAALKKAKVIKLRLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNELRQQISAEYRETVQRRYFTVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVQTQGEQLDDIESHVARAHSFVHTGTERLQTARKHQKNTRKWTCFCIILLLAIILVVLLVVLKPWQHNGSSGGGATMNDLFSGSFSRFRSTDQVSPDNQHHVIEMGATDGNVHLDKFFEEVEVVKEELKELEKLHESLRRRAVKDLRASMDADVAIALKKAKLVKVRLEALDRSNAASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDEKTVDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDTVMEIERSLNELHQVFLDMAVLVQSQGEQIDDIENHVARANSYVRGGVQQLQVARKHQKNTRKWTLIAIIILIIIILIIVLPIIRFLVWFLLSRISWSWSFRRFMLMHSFAY 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3544 635 CDD SynN 42 199 IPR006011 GO:0016020
Amo12g3544 635 CDD SNARE_syntaxin1-like 514 575 - -
Amo12g3544 635 SMART SynN_4 351 466 IPR006011 GO:0016020
Amo12g3544 635 SMART SynN_4 37 163 IPR006011 GO:0016020
Amo12g3544 635 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Amo12g3544 635 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo12g3544 635 MobiDBLite consensus disorder prediction 423 438 - -
Amo12g3544 635 ProSitePatterns Syntaxin / epimorphin family signature. 521 560 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo12g3544 635 SUPERFAMILY t-snare proteins 355 570 IPR010989 GO:0016020|GO:0016192
Amo12g3544 635 Coils Coil 212 232 - -
Amo12g3544 635 CDD SynN 383 502 IPR006011 GO:0016020
Amo12g3544 635 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Amo12g3544 635 Gene3D - 506 609 - -
Amo12g3544 635 Gene3D - 209 305 - -
Amo12g3544 635 Gene3D - 40 172 - -
Amo12g3544 635 Gene3D - 353 475 - -
Amo12g3544 635 PANTHER SYNTAXIN 7 312 IPR045242 -
Amo12g3544 635 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 335 613 - -
Amo12g3544 635 Coils Coil 137 161 - -
Amo12g3544 635 Coils Coil 356 390 - -
Amo12g3544 635 PANTHER SYNTAXIN 335 613 IPR045242 -
Amo12g3544 635 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
Amo12g3544 635 CDD SNARE_syntaxin1-like 211 273 - -
Amo12g3544 635 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Amo12g3544 635 Pfam Syntaxin 358 550 IPR006011 GO:0016020
Amo12g3544 635 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 515 577 IPR000727 -
Amo12g3544 635 Pfam SNARE domain 551 603 IPR000727 -
Amo12g3544 635 Pfam SNARE domain 248 300 IPR000727 -
Amo12g3544 635 SMART tSNARE_6 207 274 IPR000727 -
Amo12g3544 635 SMART tSNARE_6 510 577 IPR000727 -
Amo12g3544 635 MobiDBLite consensus disorder prediction 419 439 - -
Amo12g3544 635 Coils Coil 42 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3544 Amo-Chr12 124857019 124862895 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3544 348 589 SNARE and Associated Proteins AT3G11820 71.146 2.00e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3544 K08486 - gmx:100809258 490.73