Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3536 ATGGATCATGGAATTGATGTTCCACCATTTTTTGTTTGTCCAATTTCATTGGAGATCATGAAGGATCCGGTGATTGTATCCACAGGAATCACCTATGATAGAGAGAGCATTGAGAAGTGGTTATTGAAGAACAAGACATGCCCGGTGACCAAGCAAACCCTTGAGATTTTAGACCTAACTCCTAATCACACTCTTAGGAGATTGATTCAAGCATGGTGCACCTTGAATGCTTCTCATGGAGTTGAAAGAATTCCAACACCAAAGCCTCCGGTCAATAAAGAACAGGTATCAAAGCTCATCAAAGATGCTTCTTCTAATGATCAAGATTCTTCATTGCTTTCTCAGTGCCTTGTGAGCCTTAAATCGATGGCGGCCGAGAGCGAATCGAACCGGAGATGCATTGAATCAGCTGGAGCTGTTGAGTTCTTAGCTTCAATAGTTGTGATGAATCATGGTTATGATTCAATTGAGGTTAGTTCTGATGGAGATGAAGGTTTCGACACGAAATCGGGCGTTTCGGATGAAGCTTTGAGCATACTACACAATCTTCATTTGTCAGAAAATGGTTTGAAGGCCTTATTAGGGTTCAAAGATGGAATCTTTGTTGATTCCTTGACAAGGGTCTTGCAAAGAGGAATCTATGAATCAAGGGCTTATGCAGTTTTCTTGTTGAAATCCATGTCCCAAGTTGCAAACCCTAACCAGCTAGTGAATCTTAGAAATGAATTGTTTGTGGAATTGGTTCAAGTTCTAAAGGATCAAATCTCACAAAAAGCTTCAAAGGAAACACTAGAAACCCTAATTGAGATTTGTCCATGGGGAAGAAACCGGATCAAAGCGGTCGAATCCGGGGCGATCCATGTCCTTATTGAGCTTCTTCTTGATTGCAAAGAGAAGAAGCCATGTGAGATGATGATGATGGTCTTGGATATTCTATGCCAAACTGCTGATGGAAGAGCTGAGCTTCTCGGCCACGCTGCCGGCGTGGCCGTCGTTTCGAAGAAGATTCTTAGGGTTTCAACATTGGTGAATGATAGGGCTGTGAAGATTTTGCTCTCAATTGCAAGGTACTCAGCAACACAAAGTGTTGTTCAAGAAATGTTGCTAATTGGTGTTGTTGCTAAACTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCTAAGGAGAAAGCAAGGGAAATTCTCAAGCTTCATTCTAAAACATGGAGGAATTCTCCTTGTTTACCTACCAATTTTCTTTCTGCTTACCCTACAAATTAG 1263 0.4133 MDHGIDVPPFFVCPISLEIMKDPVIVSTGITYDRESIEKWLLKNKTCPVTKQTLEILDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPVNKEQVSKLIKDASSNDQDSSLLSQCLVSLKSMAAESESNRRCIESAGAVEFLASIVVMNHGYDSIEVSSDGDEGFDTKSGVSDEALSILHNLHLSENGLKALLGFKDGIFVDSLTRVLQRGIYESRAYAVFLLKSMSQVANPNQLVNLRNELFVELVQVLKDQISQKASKETLETLIEICPWGRNRIKAVESGAIHVLIELLLDCKEKKPCEMMMMVLDILCQTADGRAELLGHAAGVAVVSKKILRVSTLVNDRAVKILLSIARYSATQSVVQEMLLIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKTWRNSPCLPTNFLSAYPTN* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3536 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Amo12g3536 420 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Amo12g3536 420 ProSiteProfiles U-box domain profile. 6 79 IPR003613 GO:0004842|GO:0016567
Amo12g3536 420 Gene3D - 76 402 IPR011989 -
Amo12g3536 420 SUPERFAMILY ARM repeat 95 403 IPR016024 -
Amo12g3536 420 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Amo12g3536 420 SMART Ubox_2 10 72 IPR003613 GO:0004842|GO:0016567
Amo12g3536 420 CDD RING-Ubox_PUB 11 52 IPR045210 -
Amo12g3536 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 418 - -
Amo12g3536 420 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3536 Amo-Chr12 124706738 124708432 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3536 1 418 U-box Gene Family AT3G52450 54.897 4.20e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3536 - - gmx:100809123 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3536 12 124706738 124708432 Amo12g3536 12 124706738 124708432 ECH