Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3535 ATGGATAATGAAATTGAAGTTCCTCAATATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGACTGCCATAACAGGAATCACATATGATAGAGAAAGCATTGAGAAATGGCTTTTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCAAATGATTCTGATCTTACACCAAACCATACCCTTCGACGTTTGATCCAAGCATGGTGCACTCAAAATTCTTCACTGGGAATTGATAGAATCCCAACACCAAAGCCCCCACTTAACAAAGTTCAAGTTTTGAAGCTCCTTAAGGATCTTAAGGATCCAAGATTGAAGATCAAGAGCTTAAGGCAATTGGAGCTTCTTGCAACTGAAAATGAGAGGAACAAGAAGTGTTTGCTTGATTCTGGTGTCCCAAAAGCCATGATCATGTTCATGTTGGATTGTTACAAAAAGGGTATCAATCAAATTGGTGAAGGTATTGAAGAAGCTCTTAGTTTGTTACAATTTGTTAAGGTTTCTTCCGAGGATGTTAAGATTCTTATGTCCGAGAATGTTTTTGATTTGGTGTTGGATTCTCTAACATGGCTTCTGGGGTGCGATTTTTCGGAGAATTCGGCGACTGTAAAATCACAAGCTGTTCTAGTGATCAAGAACTTGATCCAAAGGGGTGATTCAAGTGTTATTCAGAGGCTTAAATTTGAGTTCTTTGAGAAGATTGTGAAGGTTTTGAGAAATGGTGTTGTAACACAACAAGGTATTAGCGGCGCTTTGAAAGTGTTGCTAAGTGCTTGTGCGTATGGAAGAAACAGGATCATGATGGTGGAATGTGGTGCAGTTTTTGAGATGATTGAGATTGAAATGAGAACACCTGAGAAGATAATCACTGAATTAACAATGTCTATTCTGTTTCATCTATGTTCATGTGCTAGTGGAAGAGCTCAATTCTTGTGTCACAAAGGTTCAATGGCGGTTTTGACTGAAAGGATTTTGAAGGTTTCAGCGGCGGTTGATGATAGAGCTATAATTATTCTATCATTGATATCCAAATTCTCTGCTACAAATTTGGTGCTTCAAGAGATGTTGAAGGTTGGAACTGTTGCAAAGCTTTGTTTGGTTCTTCAGAGTGATCATGCAAAGTACATCAAAGAAAAAGCAATGGAAATTATTAAGAATCATTCTCAGGTTTGGAGGAACTCTCCTTGTTTTCCTGATAAGTCTTCTTTTTTTGGCAAGTTTGCATAA 1245 0.3791 MDNEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEKWLFKNKNTTCPVTKMPLPNDSDLTPNHTLRRLIQAWCTQNSSLGIDRIPTPKPPLNKVQVLKLLKDLKDPRLKIKSLRQLELLATENERNKKCLLDSGVPKAMIMFMLDCYKKGINQIGEGIEEALSLLQFVKVSSEDVKILMSENVFDLVLDSLTWLLGCDFSENSATVKSQAVLVIKNLIQRGDSSVIQRLKFEFFEKIVKVLRNGVVTQQGISGALKVLLSACAYGRNRIMMVECGAVFEMIEIEMRTPEKIITELTMSILFHLCSCASGRAQFLCHKGSMAVLTERILKVSAAVDDRAIIILSLISKFSATNLVLQEMLKVGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSQVWRNSPCFPDKSSFFGKFA* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3535 414 CDD RING-Ubox_PUB 11 53 IPR045210 -
Amo12g3535 414 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Amo12g3535 414 PANTHER WDSAM1 PROTEIN 4 406 IPR045185 GO:0061630
Amo12g3535 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 406 - -
Amo12g3535 414 SUPERFAMILY ARM repeat 99 393 IPR016024 -
Amo12g3535 414 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Amo12g3535 414 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Amo12g3535 414 SUPERFAMILY RING/U-box 5 85 - -
Amo12g3535 414 Gene3D - 96 400 IPR011989 -
Amo12g3535 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3535 Amo-Chr12 124688360 124689666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3535 2 403 U-box Gene Family AT3G11840 42.117 2.13e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3535 - - lja:Lj0g3v0014579.1 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3535 12 124688360 124689666 Amo12g3535 12 124688360 124689666 ECH