Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3534 ATGGCGACATATTTTCATGGTAATTCGGAAATTCAAGGTGGTGGTGTTGATGGCGGCCTTCAAACTCTTGTCCTCATGAACCCCGGGTACATACAATTCTCCGACACGCCGCCGCCTCCGCCACCACACGGCGGAAACCTTATGCTTCTCAACTCTCTCGCTGCCGCCGGAAACTCCTCCCTCGCATCTCACGCGCCGCTATCACAACAGTTCCTTGGTGTGCCTCTCGCGGCCGAGCACATGCACGGCCACCATGATGTCTCGGTTGCCCTGCATGGTTACGCGCCGCGAGGGCACTACAACCTTTGGAACACAATTGACCCTACTACTGCGGCGCGTGATGCTACACGCGCCACACAAGGACTCTCTCTAAGCCTTCCAGCTATGTCGGGGGACGAGGTTCGAGTCTCCGGTGGGTCCCCGTCTTCTGCTTCCGGGGTTACCAACGGTGGAGGCGGTGTTTCGGGAATTCAGAGTGTGTTATTGAATTCAAAGTACTTGAGGGCCACACAAGAGCTTCTAGAAGAGGTTGTGAATGTTAATAATAACAACGATGCTAAGGTTGGTGTCGGAGAATCTTCATCAAACGGTGGTAATAGTGGCGGAGATGGTTCGGTTGGTGAAGGAAGTGAGAAGCGTTGTGCTGAGTTATCAACCACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCAATACCATAATCAAATGCAGATAGTAATATCATCATTTGAGCAAGCAGCTGGGATTGGATCAGCAAGAACATACACTGCCCTTGCATTGCAAACAATCTCAAAGCAATTTAGGTGCTTGAAGGATGCCATAACTGGACAAATTAAAGCTGCAAATAAGAGCTTAGGTGAAGAGGACTACTTTGGTGGTGGTGGAGGCAAAATTGAAGGGTCAAGGCTTAAATATGTTGACCATCATCTAAGGCAACAGAGAGCTATACAACAATTGGGAATGATGCATCACAATGCTTGGAGACCCCAGAGAGGACTCCCGGAGAGATCGGTTTCCGTTCTACGCGCTTGGCTATTCGAACATTTTCTTCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACAAGGAGCCAGGTATCAAATTGGTTCATAAATGCAAGAGTTAGGCTTTGGAAACCAATGGTGGAGGAAATGTACTTAGAGGAAATGAAGGATCATGATATGAACAATAGTAACAACAACAATGTCTCTGAGGACAACAAATCAAGCAAGAGCAATGAAGATCCAAACAATGCTAAAAATTCACCACCTCGAGACAGCAATTCTGAATCTGATACCAAAAAGAGCTTCAATTCGAAACAAGAAAACGTTTCAATTTCGACACCAACTTCGCAAATTGGTGGAAATTCAAGGAACAACAACAATAATAATAGTTCAGGATTCAGCTTCATGGGGTCATCAGAATTATTAGATGGAATCACACAAGGTAGTAGTCCTAAGAAGCCAAGGAGCAATGAAATTAACATTCAACTAGGAAGAAGATTGGATCGTATGAGTGGTGAACAACATTCAAATGAGTTTGGTGCAGTTAACAACACTCAAAATCCTCACCACTCTTCAGCTGCATTTCAGAGTATGCAGAATTCAAAGAGATGGGATTGGTTGTTATAA 1656 0.4529 MATYFHGNSEIQGGGVDGGLQTLVLMNPGYIQFSDTPPPPPPHGGNLMLLNSLAAAGNSSLASHAPLSQQFLGVPLAAEHMHGHHDVSVALHGYAPRGHYNLWNTIDPTTAARDATRATQGLSLSLPAMSGDEVRVSGGSPSSASGVTNGGGGVSGIQSVLLNSKYLRATQELLEEVVNVNNNNDAKVGVGESSSNGGNSGGDGSVGEGSEKRCAELSTTERQEIQMKKAKQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEDYFGGGGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHDMNNSNNNNVSEDNKSSKSNEDPNNAKNSPPRDSNSESDTKKSFNSKQENVSISTPTSQIGGNSRNNNNNNSSGFSFMGSSELLDGITQGSSPKKPRSNEINIQLGRRLDRMSGEQHSNEFGAVNNTQNPHHSSAAFQSMQNSKRWDWLL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3534 551 MobiDBLite consensus disorder prediction 399 502 - -
Amo12g3534 551 Pfam Homeobox KN domain 345 384 IPR008422 GO:0003677|GO:0006355
Amo12g3534 551 SMART prehox3 155 277 IPR006563 -
Amo12g3534 551 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 1 8 505 - -
Amo12g3534 551 Gene3D - 323 402 - -
Amo12g3534 551 MobiDBLite consensus disorder prediction 185 203 - -
Amo12g3534 551 SMART HOX_1 328 392 IPR001356 GO:0003677
Amo12g3534 551 MobiDBLite consensus disorder prediction 520 543 - -
Amo12g3534 551 Pfam Associated with HOX 160 276 IPR006563 -
Amo12g3534 551 ProSiteProfiles 'Homeobox' domain profile. 325 388 IPR001356 GO:0003677
Amo12g3534 551 MobiDBLite consensus disorder prediction 446 500 - -
Amo12g3534 551 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 505 - -
Amo12g3534 551 SUPERFAMILY Homeodomain-like 329 395 IPR009057 -
Amo12g3534 551 MobiDBLite consensus disorder prediction 185 219 - -
Amo12g3534 551 CDD homeodomain 328 389 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3534 Amo-Chr12 124669227 124674091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3534 1 436 Homeobox Transcription Factor Family AT2G35940 50.195 3.99e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo12g3534 POX 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3534 - - gmx:100791773 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3534 12 124669227 124674091 Amo12g3534 12 124669227 124674091 ECH