Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3526 ATGTCGGTGAAGGAGTGCGATCACCACAGGAAGAGGAGGCAAGTAATAATAAGGAGAATATGCGGTGGAATCTTAATATTCGTGTTCTTGGTGTTGCTAGTAATATTAATAATATGGGCAGTACTAAGACCTACCAAACCGACCTTCATACTCCAGGACATAACGGTTTATGCCTTCAACGCCACCGTCGCCAACTTCTTAACCTCCAATTTTCAGGTCACCTTGACTTCTCGCAATCCTAACGATCACATCGGTGTCTACTATGACCACCTCGCCGCCTATATTAGTTACCGGAATCAGCAAGTTACTTACCGGACCGCCATACCCCCCACATATCAGGGACATAAAGAAGTCAACGTATGGTCACCGTTTGTTTACGGAACGAATATTCCGATTGCTCCGTTCAACTTTCAGAGTCTCAGTCAAGAAGAAAATGATGTCATCCTTGTCACCCTCAGAGTTGACGGGAAGGTCCGTTGGAAGGTCGGCGTGTTCGTCTCCGGCCACTACCACATCCATGTCCGTTGTCCTGCGTACATTAATTTCGGTTCGCAGGGCAACGGCGTCAGGATTGGTGAGAACGGCGCCATGAAGTATATGATGATTCAACGTTGTGCCGTTAGCCAATCCCAATTGAATGGCTCATACTATGGCCCTTCAATTCCTCCAAATAATAACCGTAGAAGAAGAAATTGTTGTTGCCGCATTTTCAACATCTTTTGGAAGATTCTACTATCAATCATAACCCTAATTGTTCTTTTATTCATCATATCCCTTGTCATAGTTCAACCAAGACCCTTCAAATTCTCTGTCACACAAGCAAATCTCACACAATTCAACTACACTAGCACTAATACATTGTTACATTACAAACTTGTACTAAATTTCACTTCACATAACCCAAACAAAAAGCTTGCAATCTACTATGACAAAGTTGAGGGCAATGTGTTCTACCAAGGTTCTAGATTCTCCACAATTGATGTCATCACATGGCTGAATTCTTTCAGACAAGATTCTAACCACACGGATAGGATGAGTGGTGTGTTCAAGGGGACAAAAGTTTTGGTTCTTGATCAAAGTCAACGCTCTAAGTTTGACCAAGACAAGAGAGATGGGGATTTCGATATTTATGTGAAGTTGCATTTTGACATAAGGTTTAGGCTTGGTGATTTTATATTTAATAATATTAACTCAAAAGCTACGGTTAAGTGTGGGATTAAGGTTCCTTTGAGTGATTCTAATGGGAAAGTGGCTATGGAGGATAACAACAAAGAAGAAGCTCAATTGACAACCGCCGCAAACCATCGCCGCCACGGGCACAACCGCACCACAAGATGCTGTTGGTGCTGCTTCAGCCTCATATGGTACCTCCTAATCACCATCATCGTCCTCGTACTCCTCATAATCCTCGTACTCTACATCCTCCTCCAACCACGCTCCTTCACCTTCCACGTCACCCAAGCCAACCTCACCACATTCAACTACCTTAACACCACCACCGTGTTACACTACAACCTCGTACTCAACTTCACCGTCCACAACCCCAACAACAAGCTTTCCATCTACTTCGACGAAGCGCGTGGCCACGCGCTCTATCAAGAGACAGAGTTTGCCGCCGCCACGCCCTTGACGGCGCCATGGTTCTCGTACCTTCTTTACACAAAGGAAAGGGTTCCCATGAGCGTTGTCTTCTCCGGGAACAAGCTTGTGGCGCTTGATGTTGATGATTTTGAAGGGGACAATAAGAGGGGTATTTTTGGAATTGATGTGAAGATTTATTTTTTGATAAGGTTTAGAATTGGTGATGTTATAGCCGTTCTTCTCTACTTCATCGTACGGCCAAATCTCGTCAAGTTCCACGTCAGCAACGCCGTCCTCACTCAGTTCAATTTCTCCTCCGACGCCGCCGCCACCAACAACAACACGCTCCACTACAACCTCATGCTAAACTTCACGATCCGAAACCCTAACAAGCGCGTGGGAATCTACTACGACTACATCGAGGCGCGTGGATTCTACCACGACGTTGGCTTCGGTAACGTCACTATGCAACCGTTTTTTCAGGGAACGAAGAACACGACGGTGGTTGCGACGACTCTCAAGGGTGAGAATGAGGTGGTTTTGGGATCGGATAAAGGATCCAAGGTGGAGGAAGAACGAGGATCTGGTGTTTATGGCATTGATTTGAAGGTGTTCATGAAAGTGAGGTTTAAGTTTTGGTTTATGAAAACTGGGAAGGTGAAACCCAAGGCTATTTGTGTGTTGAAGGTTCCGTTGATGACGAGATCGAAGAATGGAACTTTTACGGCGGAGCACGGCGGCGCGTTTCAAGATACCGCGTGCGACTGGGGTTACCGGTGGTTGTGGTTTCATCATTAG 2379 0.4552 MSVKECDHHRKRRQVIIRRICGGILIFVFLVLLVILIIWAVLRPTKPTFILQDITVYAFNATVANFLTSNFQVTLTSRNPNDHIGVYYDHLAAYISYRNQQVTYRTAIPPTYQGHKEVNVWSPFVYGTNIPIAPFNFQSLSQEENDVILVTLRVDGKVRWKVGVFVSGHYHIHVRCPAYINFGSQGNGVRIGENGAMKYMMIQRCAVSQSQLNGSYYGPSIPPNNNRRRRNCCCRIFNIFWKILLSIITLIVLLFIISLVIVQPRPFKFSVTQANLTQFNYTSTNTLLHYKLVLNFTSHNPNKKLAIYYDKVEGNVFYQGSRFSTIDVITWLNSFRQDSNHTDRMSGVFKGTKVLVLDQSQRSKFDQDKRDGDFDIYVKLHFDIRFRLGDFIFNNINSKATVKCGIKVPLSDSNGKVAMEDNNKEEAQLTTAANHRRHGHNRTTRCCWCCFSLIWYLLITIIVLVLLIILVLYILLQPRSFTFHVTQANLTTFNYLNTTTVLHYNLVLNFTVHNPNNKLSIYFDEARGHALYQETEFAAATPLTAPWFSYLLYTKERVPMSVVFSGNKLVALDVDDFEGDNKRGIFGIDVKIYFLIRFRIGDVIAVLLYFIVRPNLVKFHVSNAVLTQFNFSSDAAATNNNTLHYNLMLNFTIRNPNKRVGIYYDYIEARGFYHDVGFGNVTMQPFFQGTKNTTVVATTLKGENEVVLGSDKGSKVEEERGSGVYGIDLKVFMKVRFKFWFMKTGKVKPKAICVLKVPLMTRSKNGTFTAEHGGAFQDTACDWGYRWLWFHH* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3526 792 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 605 783 - -
Amo12g3526 792 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 25 187 - -
Amo12g3526 792 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 437 605 - -
Amo12g3526 792 Pfam Late embryogenesis abundant protein 651 749 IPR004864 -
Amo12g3526 792 Pfam Late embryogenesis abundant protein 74 176 IPR004864 -
Amo12g3526 792 PANTHER OS05G0367900 PROTEIN 223 420 IPR044839 GO:0098542
Amo12g3526 792 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 223 420 - -
Amo12g3526 792 PANTHER OS05G0367900 PROTEIN 605 783 IPR044839 GO:0098542
Amo12g3526 792 PANTHER OS05G0367900 PROTEIN 25 187 IPR044839 GO:0098542
Amo12g3526 792 PANTHER OS05G0367900 PROTEIN 437 605 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3526 Amo-Chr12 124454631 124468154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3526 611 767 SNARE and Associated Proteins AT1G32270 38.217 3.04e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3526 - - adu:107476359 324.709