Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3507 ATGAATGAGCAATACCAGGAGGACGATGACTTTAACCAACAAGAAGAGCTAGTAAGTGACCAAGATATGATGGATGAACAGAATGAATTCGAACAAGATTTCAGAGATGAATTTACCGATGGAGCGTTTTTTTCTGAATCTGATGTGTCAGATTATATTGTTGAAGCCGCTTATGCGGTTGACTCCGTGCAAGACATTACATCTTTGAGATTTAGTGAGAATTTTGCGGAGGAAATTGGCAAATACCACTTTTCTACTTTGCAGCTTGCATTTGATTTTTATATGAAGTACTCAAAGTCGAAGGGCTTTAGTGCAAGGAAGAGCAAGACCTTCAAAAATAGTAGTTGCGAGATTTACAGACAAATGTTTGTATGCCATAGGCAAGGATTCAGGATGGAGAAATATTACACGATGGAAAAGAGGAAGAAGGAACCTAGATTGGAAACAAGAACTGGATGTCAAGCCCGAATGGATCATTTTCAAAGGTGTGTAGCACACATGCGCTTTAACGAATTCAATGCTGATTATGAATCTACACGTGGGGTGCCCGTCATGCAAACTTGTATAGAGCTGCTAGAGAGATATGCTGCTGAGTTATACACTCATGAGATATTTCTTTTCTTTCGGCCATTTCTCTCCAGAGCTGGATCAATGCGAGTTCTGAACATAGATAATACCGATGATTGCATAAAGTACATTGTGTGTAAGCATGGGAGGCCCGATTTTACGTGGACCGTTGATTTTCGTCAAGAAGAAATGATCTTCATGTGTACCTGTTTACGAATGGAGTCATTTGGTATTCCCTGCGAACATATTGTGAAAGTTCTGGTTGACAGAGACATCCGTGAGATTCCCCGGTCATTGGTATTGGATAGATGGACAAAAAAGGTTAAATCAGCACTCAATGATCCAAGTGGGTTCACCAGGGATGCTGTTGTTATTAGTCGTCAAAGTGCTTTGGTGGAATTTTCTAAACAACTGGCTGCTGTTGCTGCTAAAGTACCAGAGAGATACGAAGAGACACGTGATTTAATTATGGGATTGTACTCATCTTACAAGGCTGCAGACGAAGGAGATAATCAACCTCACTCAGGTGTAGCTAGAAGTAGCAATCCGTATGTGCATCCAACCACTGGAGGCTCAGGACAGCCATCTAAGAGGAAGAAGCGGCAACGTTGTAGTGTTTGTCAAATGGAAGGACATAAGAAGACAACATGTCCTTGGCAAAAGGACATTGACAACAACGTTATAGAAAATGAAGCAATCGGTTCGGACGATGGAGACATGTGTACCGAAGCGACGGCTGAGTTAGATAGTGATAGTTAG 1326 0.4148 MNEQYQEDDDFNQQEELVSDQDMMDEQNEFEQDFRDEFTDGAFFSESDVSDYIVEAAYAVDSVQDITSLRFSENFAEEIGKYHFSTLQLAFDFYMKYSKSKGFSARKSKTFKNSSCEIYRQMFVCHRQGFRMEKYYTMEKRKKEPRLETRTGCQARMDHFQRCVAHMRFNEFNADYESTRGVPVMQTCIELLERYAAELYTHEIFLFFRPFLSRAGSMRVLNIDNTDDCIKYIVCKHGRPDFTWTVDFRQEEMIFMCTCLRMESFGIPCEHIVKVLVDRDIREIPRSLVLDRWTKKVKSALNDPSGFTRDAVVISRQSALVEFSKQLAAVAAKVPERYEETRDLIMGLYSSYKAADEGDNQPHSGVARSSNPYVHPTTGGSGQPSKRKKRQRCSVCQMEGHKKTTCPWQKDIDNNVIENEAIGSDDGDMCTEATAELDSDS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3507 441 MobiDBLite consensus disorder prediction 420 441 - -
Amo12g3507 441 Pfam SWIM zinc finger 257 276 IPR007527 GO:0008270
Amo12g3507 441 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 159 IPR031052 GO:0006355
Amo12g3507 441 MobiDBLite consensus disorder prediction 356 391 - -
Amo12g3507 441 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 158 343 IPR031052 GO:0006355
Amo12g3507 441 MobiDBLite consensus disorder prediction 363 384 - -
Amo12g3507 441 PANTHER OS01G0607050 PROTEIN 77 159 - -
Amo12g3507 441 PANTHER OS01G0607050 PROTEIN 158 343 - -
Amo12g3507 441 ProSiteProfiles Zinc finger SWIM-type profile. 242 280 IPR007527 GO:0008270
Amo12g3507 441 Pfam FAR1 DNA-binding domain 92 172 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3507 Amo-Chr12 124253446 124255776 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g3507 FAR1 2.5e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3507 - - adu:107458210 580.867