Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3501 ATGGGGCGAGTTCGCACAAAAACGGTGAAAAAATCCTCGAGGCAAGTGATCGAGAGGTACTACTCCAAAATGACGCTGGATTTTCACACGAACAAGAAGGTTCTAGAAGAAGTAGCGCTAATCCCATCGAAGAGGCTCCGAAACAAGATCGCAGGGTTCTCAACGCACCTGATGAAGAGGATCCAGAAAGGACCGGTTCGTGGAATCTCGCTGAAGCTGCAGGAAGAGGAGAGAGAGAGGCGCATGGATTTCGTTCCAGAAGTTTCCGCCATTAATGTCGATAGCATCGAGGTCGATAAGCAGACCATCGACATGCTTGCTGCGTTAGGTATGTCTGATATTCCTGGTGTTGTGCAGGTTGAGCCTACGGCGGTTCAGCAGGTTCCGTTTGGCCGCGGTGGTTTTGCTGGCGGCGCTGGTAGGAGGTTCTGA 432 0.5162 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAINVDSIEVDKQTIDMLAALGMSDIPGVVQVEPTAVQQVPFGRGGFAGGAGRRF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3501 143 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 PANTHER 40S RIBOSOMAL PROTEIN S17 1 143 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo12g3501 143 PANTHER 40S RIBOSOMAL PROTEIN S17 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3501 Amo-Chr12 124207821 124208724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3501 1 143 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 77.778 9.81e-77 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3501 K02962 - gmx:100785402 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3501 12 124207821 124208724 Amo12g3501 12 124207821 124208724 ECH