Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3500 ATGTCTATAAACCACTACTCTTCTTCCCCTATGGACCTCCAAGAAACGACACCGTTGTGGTGGACTCAACAACCACAACCTCCTCTCCACTACAACAATAACATTCATAATTCCCAAAACACCCCTCGCTTCAACCTCAACAACGAAGAAACCGACACCGCCACTACGTCACACGAAGGAGACGAAGAAGAAGAAGAAGAGAATCTTCCAGAACCAATACAACAAGACGATAACAACCACCAACATAACGAGAGAATGTTCGAGAAGCCGTTAACGCCAAGCGACGTTGGAAAGCTTAACCGTCTCGTCATCCCAAAGCAACACGCCGAGAAGTACTTCCCTCTAACTGCCTCCTCCGCTACTGAGTCAGGCACCGAGTGCAAGGGTTTGTTACTGAGTTTCGAGGACGAGTCAGGAAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGCAGCCAGAGCTATGTGCTAACCAAAGGATGGAGCCGTTACGTCAAGGACAAGCGTCTTGACGCCGGCGACGTCGTTTCCTTCGAGCGCCACCGCGCTGACTCTCAGCGGCTCTTTATTCGCTGGAGGCGCCGATCTTCTCCGATGGCGCAAGTTAGCAGAGCGCCTCACGCTGATGTGAATAATGACAAGACTGGTGTAGCGTGGACTAGCGGATTCTATTGTGCGCACCCTCCTTATCCTGCGCATCATCTTCATAACCAACACTTAACATATCCACAACAACATGAGGGGAGTAGTAGTAGTCTTCATGCAGTAGGGTCCCAAGGGAAGAACCAAAGGATGAGACCAGTTGGAAACTGTTCAAGTTCAAGTTCGAAGGTACTTAGGTTGTTTGGGGTGAACATGGAATGCCAAACTCAACATGATGATGATTCTCAACCTTCAACAACAAAAGAGGATACTAGTAATTCAGATACCCACCATTTCTACCACCATAATTATTATCATCAACCTTCTAATAATTCTCACCCTAATCACAATCACATGTTACCTCATCAACAATCATACTACTATTAG 1029 0.4704 MSINHYSSSPMDLQETTPLWWTQQPQPPLHYNNNIHNSQNTPRFNLNNEETDTATTSHEGDEEEEEENLPEPIQQDDNNHQHNERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLTASSATESGTECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADSQRLFIRWRRRSSPMAQVSRAPHADVNNDKTGVAWTSGFYCAHPPYPAHHLHNQHLTYPQQHEGSSSSLHAVGSQGKNQRMRPVGNCSSSSSKVLRLFGVNMECQTQHDDDSQPSTTKEDTSNSDTHHFYHHNYYHQPSNNSHPNHNHMLPHQQSYYY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3500 342 MobiDBLite consensus disorder prediction 56 72 - -
Amo12g3500 342 MobiDBLite consensus disorder prediction 296 316 - -
Amo12g3500 342 CDD B3_DNA 85 186 IPR003340 GO:0003677
Amo12g3500 342 MobiDBLite consensus disorder prediction 30 79 - -
Amo12g3500 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 309 IPR044800 GO:0003700
Amo12g3500 342 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 36 309 - -
Amo12g3500 342 MobiDBLite consensus disorder prediction 30 53 - -
Amo12g3500 342 MobiDBLite consensus disorder prediction 317 342 - -
Amo12g3500 342 MobiDBLite consensus disorder prediction 290 342 - -
Amo12g3500 342 Pfam B3 DNA binding domain 87 196 IPR003340 GO:0003677
Amo12g3500 342 MobiDBLite consensus disorder prediction 242 272 - -
Amo12g3500 342 Gene3D - 75 204 IPR015300 -
Amo12g3500 342 SUPERFAMILY DNA-binding pseudobarrel domain 82 196 IPR015300 -
Amo12g3500 342 ProSiteProfiles B3 DNA-binding domain profile. 87 196 IPR003340 GO:0003677
Amo12g3500 342 SMART B3_2 87 196 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3500 Amo-Chr12 124184238 124187169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3500 84 303 RAV Transcription Factor Family AT5G06250 50.215 2.41e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo12g3500 B3 3.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3500 - - gmx:100795470 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3500 12 124184238 124187169 Amo12g3500 12 124184238 124187169 ECH