Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3483 ATGTCCTCCAATTCCATCTTCCTCCTAAAACCTTCATTCCAATTCTCAACCCAACACCATCACCACCACCACCACCACCACATCCTCCTTCTAAAATCCAAAACACCATTTTCAAAACCCATATTTTCTCCATATTACCCAAAATACCCTCCACCGCTTTCCTCTACTAGAATCCACAGCTCCACCACCTCCATAACCAAAAACTCTTCAAACACCAAAAAGAACGAAACTTTACGATTCCTGCAACCTTTTCTCATCTCAAACCGCAAACCCATTATCTTGGGTTGGCTCTGCAGCGCCATCTCAGTTTTCTCCCTCTCCCAGCTCGTCTCTAGACTCGGAAAATTCAGCAACGCCGCCATTGATGGACCTCAATTGAGAAGTCAAGGTCTCATCTTGTTGTGTCTTGTGGCTGCCCGTTTGGTCTCCGGGTACGGGCAGCATGCCCTTCTTTGGGACGCTGCCCTTAAGACAGTGTACGAGGTTCGTGTCCATGTCTTTGACCGTGTCCTTGAGAGGGAGCTTGGTTACTTCGAAGGAAGAGAAGGTGGTGCTTCAGCTGGGGACATTGCTTATAGGATCACTGCTGAAGCTTCTGATGTTGCTGACACTGTTTATTCTGTTCTTAATACCATAGTACCTAGCACTCTCCAGTTATCGGCGATGATGGCTCAGATGATAGTTATAAGTCCAGTCCTTTCTTTGATTTCATTCACGGTCATTCCTTGCATGTCGCTTTTTGTTGCTTATCTTGGTCAAGAACTTCGAAAGATATCTAGAGAGGCACATCTTAGCATTGCTGCTCTCTCAGCATATCTAAACGAGATGCTTCCTGCGGTTTTCTTTGTGAAAGCAAACAACGCGGAGTTGTGTGAGAGTGCCAGGTTTAAGAGGCTGGCTCAGATAGACTATCATGCAAAATTGAACAAGAGGAGGATGAAAGCAGCTATTCCTCAGGTCATACAAGCTATTTACTATGGAACTCTCTCCATACTATGCGCTGGTTCGCTGTTGATTTCAAGAGGTTCATTTGATGGCCACAGCTTCATTTCCTTTGTGACATCATTGCTTTTCTCTATTGAACCAATCCAGGATGTGGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCGGCCGTTGAACGCTTGCATGATATGACCAAGTTTAAAGATAAGGTGGTTGAGAAACCAGATGCTGTTGAGTTAGGCCATATTATGGGAGAGCTGAAATTTCGTGATGTCTCCTTTAAATATAATGATGACATGCCACATGTTTTGAATGGGTTGAATCTTAACATTAGAGCCGGAGAGATAGTCGCTCTTGTCGGTCCTTCCGGTGGCGGGAAAACAACACTTGTAAAACTATTGCTTCGGCTTTATAACCCTGTGTCCGGCTCTATTCTAATTGATAACCATAACATTGAAAACATTCGGTTGCGAAGTTTGAGAAAACATGTTGGTCTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAATTGCTGAAAACATTGGTTATAGGGACCTAACAACAAAAATTGACATGGAGAGGGTAAAGCATGTAGCTCAAACTGCTCATGCAGATGAGTTTATAAGAAAACTTCCTGAAGGATACGAAACCAATATTGGACCGAGGGGCTCTACCTTAAGTGGCGGGCAGCGGCAAAGGCTGGCTATTGCAAGGGCGCTCTATCAAGATCCGTCTATTTTGATTCTGGATGAAGCAACTTCAGCTTTAGATAGTAAATCCGAATTATTGGTTAGAAAAGCCGTTGAGCACTTGATGGAAAATCGCACGGTGCTTGTGATAGCTCATCGCTTGGAAACAGTTATGATGGCTAAAAGAGTATTCCTCATGGATAATGGGAAGCTACAAGAAGTTCCAAGATCAACTATGTTCAATGGTCACAAGGATTCATTGTTATCATCTGGCCTTGTTATTTGA 1944 0.4352 MSSNSIFLLKPSFQFSTQHHHHHHHHHILLLKSKTPFSKPIFSPYYPKYPPPLSSTRIHSSTTSITKNSSNTKKNETLRFLQPFLISNRKPIILGWLCSAISVFSLSQLVSRLGKFSNAAIDGPQLRSQGLILLCLVAARLVSGYGQHALLWDAALKTVYEVRVHVFDRVLERELGYFEGREGGASAGDIAYRITAEASDVADTVYSVLNTIVPSTLQLSAMMAQMIVISPVLSLISFTVIPCMSLFVAYLGQELRKISREAHLSIAALSAYLNEMLPAVFFVKANNAELCESARFKRLAQIDYHAKLNKRRMKAAIPQVIQAIYYGTLSILCAGSLLISRGSFDGHSFISFVTSLLFSIEPIQDVGKAYNEWRQGEPAVERLHDMTKFKDKVVEKPDAVELGHIMGELKFRDVSFKYNDDMPHVLNGLNLNIRAGEIVALVGPSGGGKTTLVKLLLRLYNPVSGSILIDNHNIENIRLRSLRKHVGLVSQDITLFSGTIAENIGYRDLTTKIDMERVKHVAQTAHADEFIRKLPEGYETNIGPRGSTLSGGQRQRLAIARALYQDPSILILDEATSALDSKSELLVRKAVEHLMENRTVLVIAHRLETVMMAKRVFLMDNGKLQEVPRSTMFNGHKDSLLSSGLVI* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3483 647 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 61 637 IPR039421 -
Amo12g3483 647 Gene3D - 400 643 IPR027417 -
Amo12g3483 647 SUPERFAMILY ABC transporter transmembrane region 76 388 IPR036640 GO:0005524|GO:0016021
Amo12g3483 647 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 375 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3483 647 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524
Amo12g3483 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 627 IPR027417 -
Amo12g3483 647 Pfam ABC transporter 426 577 IPR003439 GO:0005524
Amo12g3483 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 646 IPR003439 GO:0005524
Amo12g3483 647 Pfam ABC transporter transmembrane region 108 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3483 647 Gene3D ABC transporter type 1, transmembrane domain 67 388 IPR036640 GO:0005524|GO:0016021
Amo12g3483 647 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 61 637 - -
Amo12g3483 647 CDD ABC_6TM_exporters 92 383 - -
Amo12g3483 647 SMART AAA_5 435 623 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3483 Amo-Chr12 124050638 124055419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3483 131 644 Calmodulin-binding Proteins AT2G36910 29.002 1.05e-57 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3483 12 124050638 124055419 Amo12g3483 12 124050638 124055419 ECH