Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3458 ATGGGTTCATACAGTGGCACTTGTGAAATAGTTGAAGCAGGGGAAGACATAGATAAAGAGAAAGCTGCAGAGATATATCGATCCAATTCTGGATATAATGCAGCTGAGAAAAACCAGAAGCTTCCTGTGCTGAAACTACAGCATAAGGATCATCTAGATGATGAAATTAATAAGCTGTTTGAGTCAATTACTCTTAAATCTTCATCAAGGGATTGGAGCCTAATACAAGATGGTACCAGCCCAAAGATGAAAAGTATATTAAAAAAGCCAATGACAATGGGTGTTCCTCGGTCGCCACGAGTTGGAGCTTCTGAGCCAGTGACTTTAAAGCAAGCATTAAGGGACATGTGTATATCTAAGGCATCTGAAATGGCTGCTATGAGAAGATTATCAAAGTCATCAGCTTCTCCAAGAATATCTGAGGCTGGAAAGATACATACACTGTACAATTCTGTTGTAGTTGAAGCTAGACGATCAGGGCCTTCTTATGTTGGTAGTAAAGGTAGTAGTACAATGGAGATATCTCTAGAGACAGATGAAAGTAAGTCACTTTCATTGGATACAACATCCCAGTCTCATTCAAATGCTACAAGCACATCATTGAGCCAAAATGTTCATACTTCTGAAACTGCTGGAACAACTGAACACAATGATACCAGGGATTCATCATCAATGCAAAGTGATTCTGCATCTTCATCATGTAAAGTAGTTGTTCAATCACAGCCTTTGGAACCTGCTCAAGTAGAAAAACAAATATCTGAATCTTCTCCTTCTGGTGATAGCAGTAAGGAAAGTAAATTAGACTTGTGTGAAGACGAGTCATCCCCTAAAAAACTGGGAAACAAAGCATCTGTACCAAAGAAAGGTAGGCTACACTCAGGATCTTCCTCTTCTACCTCAGTAAATGGCAACAGAGTGTGCAAAAAGTCGCGATCCCCTCGAACAGTCAAAATGGTCATCAAGAACAAGGGTTTGGTAAAGAAGAAACTAAAGCAGGGTTCAGGTTCTGCATTATGTGATCCTAGATCCAATGATGCAAATAATAAGCCAGCTCCACTGGTATGTGAAAGATGTTTGTGTGCTATAGAAAACAAAGGTAAAGGAGACAACCAAGACATGGGGTCTATCAGGCCTGGAGAAGGAGTAAACTCAAGTGAAGCGCGGTCAGGCTTGGTTTCGACCAGCTGCAATAGTGGCAGAGAAATTACAGAGGTGAAAAAGAATACCAGATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGATTACAGCAGTAGTACCAGTACCAGTGATGAGAGCAATGTCAGTGGCTCTACTTGTGGCAATCGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGGTCAAATGCGTCATGGAGTCTTGGGATTGAGACATTTTAATCTTTTGAAGAAACTTGGCTGTGGAGACATTGGGACTGTTTATCTTGCTGAACTGATTGGCACAAATTGCTTGTTTGCTATTAAGGTTATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTCGGGCTCAAACTGAAAGAGAAATATTAAGGATACTGGATCATCCTTTTCTTCCAACAATGTATGCACAGTTTACATCAGATAATCTGGCATGTCTGGTCATGGAGTATTGTCCTGGTGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTCCTTCTTGCTTTGGAATACTTGCACATGCTTGGAATTGTTTACCGTGATTTGAAACCTGAAAACATTCTAGTTAGAGAAGACGGGCACATTATGCTGACAGATTTTGACCTCTCACTGAGGTGTGATGTTAGCCCAACGCTTCTAAAACAATCTTCAGACATGGATCCTGCCAAGGTTTCCGGTCCATGTGTACAATCCAACTGCATTGAGCCATTCTGCATCGAACCGGTGTGTCAAGTTCCATGCTTCAGCCCAAGATTCTTACCTCCTGCTGCAAAGGCAAGGAAACAGAAAGCTGAACTTGCTGCCCATATCAGATCACTACCACAGCTCGTGGCCGAGCCGACAGACGCAAGATCGAATTCATTTGTAGGCACTCATGAATACTTAGCACCAGAGATCATCAAAGGGGAAGGGCATGGAGCTGCAGTAGATTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGAAGAACACCCTTTAAAGGCTCCAACAATGAAGAAACCTTAGCCAATGTGGTTCTGCAGAGTTTAAGGTTCCCTGATACCCCTTTTGTTAGTTTCCAAGCAAGGGACCTTATAAGAGGCTTGTTAGTTAAGGAACCTGAGAATCGTTTGGGTACTGAGAAAGGTGCTGCTGAGATTAAACAGCATCCCTTCTTTGAAGGTCTTAATTGGGCCTTAATACGCTGTGCTACACCACCAGAAGTACCAGATTTATGTGAGTTTGAGTTCTCAGAGATTACATCACAATCACATGGTAATAAGGGTGGGAAGTATTTAGAGTGTAAAACAACAGGGGAGCAAGTGGAGTTTGAATTGTTTTGA 2586 0.4172 MGSYSGTCEIVEAGEDIDKEKAAEIYRSNSGYNAAEKNQKLPVLKLQHKDHLDDEINKLFESITLKSSSRDWSLIQDGTSPKMKSILKKPMTMGVPRSPRVGASEPVTLKQALRDMCISKASEMAAMRRLSKSSASPRISEAGKIHTLYNSVVVEARRSGPSYVGSKGSSTMEISLETDESKSLSLDTTSQSHSNATSTSLSQNVHTSETAGTTEHNDTRDSSSMQSDSASSSCKVVVQSQPLEPAQVEKQISESSPSGDSSKESKLDLCEDESSPKKLGNKASVPKKGRLHSGSSSSTSVNGNRVCKKSRSPRTVKMVIKNKGLVKKKLKQGSGSALCDPRSNDANNKPAPLVCERCLCAIENKGKGDNQDMGSIRPGEGVNSSEARSGLVSTSCNSGREITEVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNVSGSTCGNRPHMSKDVRWEAIRHGQMRHGVLGLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLACLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKQSSDMDPAKVSGPCVQSNCIEPFCIEPVCQVPCFSPRFLPPAAKARKQKAELAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLRFPDTPFVSFQARDLIRGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCATPPEVPDLCEFEFSEITSQSHGNKGGKYLECKTTGEQVEFELF* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3458 861 PANTHER FLIPPASE KINASE 1-RELATED 1 861 - -
Amo12g3458 861 MobiDBLite consensus disorder prediction 160 317 - -
Amo12g3458 861 MobiDBLite consensus disorder prediction 163 263 - -
Amo12g3458 861 MobiDBLite consensus disorder prediction 386 402 - -
Amo12g3458 861 MobiDBLite consensus disorder prediction 414 448 - -
Amo12g3458 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Amo12g3458 861 MobiDBLite consensus disorder prediction 290 309 - -
Amo12g3458 861 ProSiteProfiles Protein kinase domain profile. 475 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3458 861 Pfam Protein kinase domain 476 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3458 861 Pfam Protein kinase domain 704 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3458 861 MobiDBLite consensus disorder prediction 369 449 - -
Amo12g3458 861 MobiDBLite consensus disorder prediction 264 278 - -
Amo12g3458 861 Gene3D Transferase(Phosphotransferase) domain 1 559 825 - -
Amo12g3458 861 SMART serkin_6 475 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3458 861 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 861 - -
Amo12g3458 861 CDD STKc_phototropin_like 473 826 - -
Amo12g3458 861 SUPERFAMILY Protein kinase-like (PK-like) 453 824 IPR011009 -
Amo12g3458 861 Gene3D Phosphorylase Kinase; domain 1 475 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3458 Amo-Chr12 123783682 123788552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3458 1 861 AGC Kinase Gene Family AT3G52890 51.887 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo12g3458 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3458 - K08286 gmx:100813470 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1656 16 32146327 32149320 Amo12g3458 12 123783682 123788552 PCT
Amo06g1634 06 55103297 55108439 Amo12g3458 12 123783682 123788552 PCT
Amo12g3458 12 123783682 123788552 Amo06g1634 06 55103297 55108439 PCT