Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3454 ATGGAAATGGAAGATCATCATCACCAACTTCATCATCAGCAGAACCACCACTACGGTTGTTTAACCGATCTGTTAATGAACAACGCTCCTATGCACCAATCCCAACCACCGCAACCACCAATAACACTAGGCGGAGCCACCAGCCACCACCAGCAGCACCACCACCGCAACCTGCCACCGTTGCCGGAGACAACGATGACGATGTTTGAGATGATGGGAGCGCCACGTGGGGTGGTTATGAATAGCGAGTTGGCATCAACAACGAGAGGATCAGGTGTGGGAGGGTGCATGGGTGGGGATGCATCCTCAAACAACGGAAGATGGCCAAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTAAGCTTCACCCTAAATTCAAAGATGCTAATCACAAAGGTCCCTTGTGGGAACAAGTCTCCAGGATAATGTTAGAAGAACATGGATACCAAAGGAGTGGAAAGAAATGCAGGGAGAAGTTTGAGAATCTGTACAAATATTATAAGAAGACAAAGGAAGGAAAAGCAGCAAGACAAGATGGGAAGCATTATAGGTTCTTTCGCCAACTTGAAGCCTTGTTTGGAGACAACAACAACAATTCCAACAACTTTGTTACCAACAACAACCTTATTAATTTACAAACAAATCAAGACAAGTTTCATAATCATCATTATTCTCATCACCATCACAATAACAATAATAATAATAGTGTTAGCCTCATCACAAACTCCACTAGTGAGTTTGACACATCATCATCATCAGAGACCGATGATGATGATGAATCGAGGAAGAAGAAGAGGAGGAGGTGGAAGATGAAGATGAAGATGAAGGAGTTCATTGACTCACAAATGAGCAAGCTTGTGAAGAAGCAAGAGGAATGGCTTGAGAAGTTAGTGAAGACAATGGAAGAGAAAGAGAAGGAAAGAGTGGTGAGAGAAGAAGAATGGAGAAGAGAAGAGGCAACTAGGTTGGAGAAGGAGCACATGTTTTGGGCCAAAGAAAGAGCATGGATTGAAGCAAGGGATGCTGCATTAATGGATTCTTTTAACAAGTTAACAAGGAGAAGGGAAATCATCAAGGCTGAAGAACAAGAACATGATCAAGAAGCTCCTCATCATCATCAAGACGATGGTGTGATGATGATGATGATGATGATGGGAGACGAAGAAATTATCAAAAATCATAACGAGGATAACAACGAAGATATTAGAGAAAAATACATAAGCATGGGTTCTTTTGGGCATGAAAGGACTGATTTGCATAGTGGAAGGAGAAATGGTAGGTCAGCAATGGGTGGCAACTATTCAAGTGAAAAAAATGAGAAGCAAAAGGAAAATCCAAGAAAA 1347 0.4209 MEMEDHHHQLHHQQNHHYGCLTDLLMNNAPMHQSQPPQPPITLGGATSHHQQHHHRNLPPLPETTMTMFEMMGAPRGVVMNSELASTTRGSGVGGCMGGDASSNNGRWPRQETLTLLEIRSKLHPKFKDANHKGPLWEQVSRIMLEEHGYQRSGKKCREKFENLYKYYKKTKEGKAARQDGKHYRFFRQLEALFGDNNNNSNNFVTNNNLINLQTNQDKFHNHHYSHHHHNNNNNNSVSLITNSTSEFDTSSSSETDDDDESRKKKRRRWKMKMKMKEFIDSQMSKLVKKQEEWLEKLVKTMEEKEKERVVREEEWRREEATRLEKEHMFWAKERAWIEARDAALMDSFNKLTRRREIIKAEEQEHDQEAPHHHQDDGVMMMMMMMGDEEIIKNHNEDNNEDIREKYISMGSFGHERTDLHSGRRNGRSAMGGNYSSEKNEKQKENPRK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3454 449 MobiDBLite consensus disorder prediction 89 108 - -
Amo12g3454 449 MobiDBLite consensus disorder prediction 222 241 - -
Amo12g3454 449 MobiDBLite consensus disorder prediction 28 61 - -
Amo12g3454 449 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 48 381 - -
Amo12g3454 449 Pfam Myb/SANT-like DNA-binding domain 107 193 IPR044822 -
Amo12g3454 449 PANTHER - 48 381 - -
Amo12g3454 449 Coils Coil 288 315 - -
Amo12g3454 449 Gene3D - 108 170 - -
Amo12g3454 449 MobiDBLite consensus disorder prediction 405 424 - -
Amo12g3454 449 CDD GT1 107 172 - -
Amo12g3454 449 ProSiteProfiles Myb-like domain profile. 100 165 IPR001005 -
Amo12g3454 449 MobiDBLite consensus disorder prediction 28 48 - -
Amo12g3454 449 MobiDBLite consensus disorder prediction 405 449 - -
Amo12g3454 449 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3454 Amo-Chr12 123721863 123725437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3454 107 358 Trihelix Transcription Factor Family AT5G03680 56.391 6.04e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo12g3454 Myb_DNA-bind_4 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3454 - - aip:107628057 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3454 12 123721863 123725437 Amo12g3454 12 123721863 123725437 ECH
Amo16g2261 16 90829663 90833289 Amo12g3454 12 123721863 123725437 PCT
Amo12g3454 12 123721863 123725437 Amo16g2261 16 90829663 90833289 PCT