Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3451 ATGAGCATGGAGAGTTCACGTAGACCTTTCGATAGATCGAGAGAGCCAGGGCCTAAGAAGCCTCGATTGATGGAAGACCCGAATCAGAGACCGTTTCCTCAGCGACAATTGGCTTCAGGGATTACAACGATGTCGTCAACGAGGTTCAGAGCAAACGACAGGGACCCAGAAAGCAGTGAATCCGGCCGAGGCGGTGGCGGTTACCAGCCGCAGCCGCTGCCGCAGCACCATGAGCTTGTGAATCAGTACAAGACAGCTCTTGCTGAGCTCACTTTCAATTCGAAAATGATCATTAACAATTTGACTATAATTGCAGGCGAGAATCAATCGGCTGCGAAGGCGATTGCCGCCACTGTTTGTGCTAACATTCTAGAGGTTCCCAACGATCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATTGGGCGGGATTATACAAAGTACTTTGCTGCCAAACTACCCGAGGTATTCTGCAAGGCATACAGACAGGTTGAACCTGCTATCCATCAAAGTATGAGACATCTTTTTGGAACTTGGGAAGGATTCATTCCTCCTCAGACCCTTCGGGCTATTGAGAAGGAACTCGGCTTTACTCCACCAGTAAATGGTTCAGCTGCCTCATCTGCTACCATCAGGAGCAATTCACAGTCCCCACGTCCTCCTCATGGCATCCATGTGAATCCCAAGTATTTAGAGAGGCAACGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTTGATGAAATTACTGGAGCATGTGCGAACTCCAATGAGGACCCCGAGAGGCCAGATAGAACTTTGGGTACAGCACGGCCATGGTTGGATCCTAGTGTTAGTACCCCAAGAGATGCATTTAATGATTCTGTTTTGGAAAAGAGTGTTGGTGTAACCTGTGGGGGCAATGAATATGGTTCTGATCTTTCACAGAATTTGGGCTTAGGTATGGTAAGAGCTGGTGACAAAAGTTGGTTTAAAGCAGGTGGAGTTCCGGGAACCATATCTGGCCAAAGAAATGGTTTCAGTGAGAAGCATAGTTTTTCGAATACTGAAGCACCAAAATATAATCAGCCAACACAAAACATAAATAGCATTCGGAGCAGTGTGATGTCACGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATATGGGATGAGATGAATTCTAGATCGACCGGTCTTGGTGCACCAAATGTCTCTAACAACTTGAGCAAAGATTCTTGGCCAGCGGATGATGAGAATTTTGAAGTTGAAGATCCAGTCCAAATAAGAAACCCCTATGGGGCAAATCTTGATAGAGAATTGGCCACTCTAGGCAATGAAAAGAAACGATTTTCCTCATTTCAGCGTCATCCATCAGTACCGTGGCAACTGCAGGAGCAGCACTCACTTGAAGAGTTGAATCAAAAGCCAGGTCACTCGGAAGGATTTATGTCCACTCTTAGTGGTCTGCAAGCCAATACAAATTCTGCTGTCAGGATGGGGAATCGGTCTTTCTTGCCAAATGCAACAACAGGACTGCCAGGAATTGTGGGACAACAACAACTTCACTCAATTGGAGTTGAATCCCCTTCTGGGCAGTCACCCTTGCGACAACAATCTTCACCACCACCAGTTGGTAACTTGCGAAGACCACATCAAAAGGATTTGCCAGGTTCATTTTCTTCGGCAACTCCTTTTCAGTCAAGGCCTCAGCAGCAGCTTCACCTGTCTCACAGTGAAGTTACCAAGAAACCTCCTCCCCTGTCTAGAGTTGCGCTAGCCAAAGAGACTCTTGAACAGTCAACCACAGGTAATGTGGAAGCTGCTGCTCTAAACGGTGGAACATTATCCAGCATGTCCAATGCAAGTCGTCTGGATTCAAGGAATCTTCTGTCTCAATTAGGTGTTCAGCCTCCCCGCTCAGTTGGGCCTTCCCCTGCCAAATTAAGTTCCTTGGTGTCTGCAATTTCAACCCCATCTTCATTAGGTCCTTCAAATAATAGTTTATCTGCTTTGCCAAAAGTACCTGAAAGAAAGGCTGGGCAATTGACAAGGGCATCAACTCTACCACCGGCTTCCTCTGATGTCAGTGTTGCCTCTGCTCAGACAACAAGTGCCAGCAGTAATACCTCAAATCCGATTGCAAACCTTCTAAGCTCTTTAGTTGCAAAGGGTTTGATATCTGCAGAAAAAGAATCACAAACTAAGGTGCCATCTGAGTTCCCAGCTCGGTTGGAAGATGAAAGAGACAGCATTACCACCAGTAGCTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGCAGCTGTTCCAGTACCTTCTGCCACAGATGATGTAAATGATACTGCAAAATCCCCAACATCCTTATCTGAAACAACCAGCACAGAGATCAGAAACCTCATTGGCTTTGAGTTTAAGCCTGATGTAATCCGAGAAGTGCATCCACCTGTCATTAAAGGATTATTTGATGATCTCCCTCATCATTGTGACATTTGTGGCCGTAGGCTTAAATTCCAAGAGCAGTTTAATAGACACTTGGAGTGGCATGCCACAAGGGGGGAAAATGATCTAATTAGGGCATCAAGAGGATGGTATCCAAAGTCAATTGATTGCATTGTTAGCAAGGGTGAATCTTCATCCACGTCTGAGTTTTCCGGATCTGTTGATACATACAGCAAGGAAACAAGAAGCACTCAAGAGGACTCAATGGTTCAAGCAGATGAAAGCCAATGCTTGTGTGTGTTGTGTGGTGAGGTATTTGAAGATTTCTACTGTCAAGAAAGTGGTGAGTGGATGTTCAAAGGGGCAGTTGACATGACTAACTCAGATAGTGAGTTGGGAAATAGAAATGCTAGTACTACAAGGGGTCCCATTATTCATGCAAGGTGCTTCTCAGGAAACTCTATATCCAGCTTCGTCAAGATGGAACAAGATTAA 2922 0.4548 MSMESSRRPFDRSREPGPKKPRLMEDPNQRPFPQRQLASGITTMSSTRFRANDRDPESSESGRGGGGYQPQPLPQHHELVNQYKTALAELTFNSKMIINNLTIIAGENQSAAKAIAATVCANILEVPNDQKLPSLYLLDSIVKNIGRDYTKYFAAKLPEVFCKAYRQVEPAIHQSMRHLFGTWEGFIPPQTLRAIEKELGFTPPVNGSAASSATIRSNSQSPRPPHGIHVNPKYLERQRLQQSSRIKGVDEITGACANSNEDPERPDRTLGTARPWLDPSVSTPRDAFNDSVLEKSVGVTCGGNEYGSDLSQNLGLGMVRAGDKSWFKAGGVPGTISGQRNGFSEKHSFSNTEAPKYNQPTQNINSIRSSVMSRSWKNSEEEEYIWDEMNSRSTGLGAPNVSNNLSKDSWPADDENFEVEDPVQIRNPYGANLDRELATLGNEKKRFSSFQRHPSVPWQLQEQHSLEELNQKPGHSEGFMSTLSGLQANTNSAVRMGNRSFLPNATTGLPGIVGQQQLHSIGVESPSGQSPLRQQSSPPPVGNLRRPHQKDLPGSFSSATPFQSRPQQQLHLSHSEVTKKPPPLSRVALAKETLEQSTTGNVEAAALNGGTLSSMSNASRLDSRNLLSQLGVQPPRSVGPSPAKLSSLVSAISTPSSLGPSNNSLSALPKVPERKAGQLTRASTLPPASSDVSVASAQTTSASSNTSNPIANLLSSLVAKGLISAEKESQTKVPSEFPARLEDERDSITTSSSLPVASVSGSAAVPVPSATDDVNDTAKSPTSLSETTSTEIRNLIGFEFKPDVIREVHPPVIKGLFDDLPHHCDICGRRLKFQEQFNRHLEWHATRGENDLIRASRGWYPKSIDCIVSKGESSSTSEFSGSVDTYSKETRSTQEDSMVQADESQCLCVLCGEVFEDFYCQESGEWMFKGAVDMTNSDSELGNRNASTTRGPIIHARCFSGNSISSFVKMEQD* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3451 973 ProSitePatterns Zinc finger C2H2 type domain signature. 824 844 IPR013087 -
Amo12g3451 973 MobiDBLite consensus disorder prediction 206 230 - -
Amo12g3451 973 Pfam CID domain 84 184 IPR006569 -
Amo12g3451 973 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 541 970 - -
Amo12g3451 973 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 540 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 206 225 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 553 575 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 1 74 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 728 788 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 682 709 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 773 788 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 676 709 - -
Amo12g3451 973 MobiDBLite consensus disorder prediction 522 583 - -
Amo12g3451 973 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 540 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo12g3451 973 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 541 970 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo12g3451 973 CDD CID_Pcf11 80 196 - -
Amo12g3451 973 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Amo12g3451 973 MobiDBLite consensus disorder prediction 1 26 - -
Amo12g3451 973 SMART 558neu5 78 200 IPR006569 -
Amo12g3451 973 MobiDBLite consensus disorder prediction 32 49 - -
Amo12g3451 973 SUPERFAMILY ENTH/VHS domain 74 198 IPR008942 -
Amo12g3451 973 MobiDBLite consensus disorder prediction 522 542 - -
Amo12g3451 973 Gene3D - 73 200 IPR008942 -
Amo12g3451 973 MobiDBLite consensus disorder prediction 252 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3451 Amo-Chr12 123683361 123690031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3451 796 958 C2H2 Transcription Factor Family AT4G04885 37.952 5.08e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g3451 CID 5.3e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3451 K14400 - gmx:100807857 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3451 12 123683361 123690031 Amo12g3451 12 123683361 123690031 ECH
Amo06g1569 06 49654431 49658343 Amo12g3451 12 123683361 123690031 PCT
Amo12g3451 12 123683361 123690031 Amo06g1569 06 49654431 49658343 PCT