Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3449 ATGGCCTTACTCTGCCACCGCCATCGACGTAGCTCTACTCCTACTCCAACAGTGGCTACATTCCACCGCCTTTCAACCCTTTTAAGGTTTCATTCCAACCCCACTTCTCCATTTCACTCTCCTTCAACTCCAATTTACCCCTCACACATCACAACCCAAAACCAAACCCAACCCATTACACCATTGGAGTGCTTGCACGGGAATCCTGTTCCACCCTTTTTGTCTAAAACCTTCGACCTTGTGGATGACCCTTCTTTGGATCCTATCATCTCATGGGGCTCCACTGGTGCTAGCTTCGTTGTGTGGGACCCTATGGAGTTTTCAAGGCTCGTGTTGCCTCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTTCGCCAGCTGAATACTTACGGATTCCGCAAGATTGACACTGACAAGTGGGAGTTTTTCAATGAAGCTTTCCAGCGAGGGAAGAAACATTTACTGAAGAACATCCAACGGCGCAGGTCAACTCAATCGCAGCAAGTTGGTAGCCACATTGGAACTTCTATTGATGCTGGGAGACCTGGACTCGAGGTTGAAATAGAGCTACTGAGGAAGGAGAGAAGTATGTTAATGCAAGAGGTGGTTGATTTGCAGCAACAACAGCGAAGAACGGTTCACCATGCTGGAGAAGTGAATCAGAGACTAGAATCTGCAGAGCAAAGGCAGAAACAAATGGTTTCCTTCTTGGCCAAGTTATTTCAGAATCCGGCCTTCTTGGCTCGCCTTAGGGATAAGAAGGAACAAAGACAGATAGAATCTCCAAAAGCAAGAAGGAAGTTTATCAAGCATCAACACGAAGCAGGAAATTCCGAAACTCCCAAAGGTCAGGTAGTGAGGTACCAACCTGATTGGAAAAATAGAACAGTTTCTTCTGAAACTCCGGAACTAAATCCAGTTTCCTTTGAACAGTCTCCTCAATATCTCTCACAGGACTTGGCAAGAGAAATTTCTGTTGGTGCAGAAAATCTGACTTTGCAGTTGGACAAAATCATGTCAGATGAATTGGGTGCATTGCATGAGGCCATGCCAACTCCAGGAATTGTTGGAGAAGGATCATCAAGCTATGGACTTGAAGATCCTCTTTCCGAAGGGAAAAATGCCTTCAACCCAAGTCAAGATGTTCTTTCAGAATACTTTTTTCCTGTGTTTCCCCCTGTTGGAACTGAAGGCATTATCAAACAAGAAGATGCATGGGACCCTGCCTTCAATGCTAGTGTTGCTGCTTCAAGTTGTGGGAATGAGCTGTGGGGTAATCCTGTCAACCATGGCGTACCAGAATTCGGAGGCACTAGTGGCGTGTCCGACATATGGGATATCGGCTCAGGAAGTTTAGGAATTGATAAGTGGCCAGCTGATGAATCTCCAATGGATAAAAAGGAGAGTCAAGGTGGCCAGCCAGAAGATGATAGACCTTAA 1443 0.4574 MALLCHRHRRSSTPTPTVATFHRLSTLLRFHSNPTSPFHSPSTPIYPSHITTQNQTQPITPLECLHGNPVPPFLSKTFDLVDDPSLDPIISWGSTGASFVVWDPMEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSTQSQQVGSHIGTSIDAGRPGLEVEIELLRKERSMLMQEVVDLQQQQRRTVHHAGEVNQRLESAEQRQKQMVSFLAKLFQNPAFLARLRDKKEQRQIESPKARRKFIKHQHEAGNSETPKGQVVRYQPDWKNRTVSSETPELNPVSFEQSPQYLSQDLAREISVGAENLTLQLDKIMSDELGALHEAMPTPGIVGEGSSSYGLEDPLSEGKNAFNPSQDVLSEYFFPVFPPVGTEGIIKQEDAWDPAFNASVAASSCGNELWGNPVNHGVPEFGGTSGVSDIWDIGSGSLGIDKWPADESPMDKKESQGGQPEDDRP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3449 480 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 SUPERFAMILY "Winged helix" DNA-binding domain 68 162 IPR036390 -
Amo12g3449 480 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 59 477 - -
Amo12g3449 480 MobiDBLite consensus disorder prediction 460 480 - -
Amo12g3449 480 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 Gene3D - 65 163 IPR036388 -
Amo12g3449 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 477 IPR027725 -
Amo12g3449 480 MobiDBLite consensus disorder prediction 255 283 - -
Amo12g3449 480 Coils Coil 189 209 - -
Amo12g3449 480 MobiDBLite consensus disorder prediction 255 278 - -
Amo12g3449 480 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo12g3449 480 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3449 Amo-Chr12 123674991 123677735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3449 61 466 HSF AT5G03720 48.009 2.73e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo12g3449 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3449 K09419 - gmx:100807323 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3449 12 123674991 123677735 Amo12g3449 12 123674991 123677735 ECH