Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3439 ATGAACAAGCTCTTGTTCTTCACCATCATCACCACCATTATCATTGTTCTTACACCACAACAAGCATTGAGCCACCACAATGACACACATGCACTCACCCTCTTCCGCCTCCAAGCCGACATCCACGGCCACCTCCTCCCTAACTGGACCGGCGCCGACGCCTGCTCCTTGGCCGCGCCATGGCGCGGAGTTTCTTGCTCCCCAAACAACCGTGTCACCACACTCTCCCTACCTTCCCTGAACCTTAGAGGACCCTTAACACCTCTCTCCTTCCTCACTCACCTTCGCTTTCTTGATCTTCACGACAACCGTTTAAACGGCACCATTGCACCTTTGATCTCCAATTGCACCAACCTCGTGCTTCTCTATCTCTCCGGCAACGATCTCTCCGGCGAGATTCCACCGGAGATATCTTCTGTCACCGGCCTCCTCCGCCTCGACCTATCCGGCAACAACATAGGTGGCAAGGTTCCAAAGGAACTGTTGAATTTGACAAAGCTTCTTACTCTGAGGCTTCAAGACAATGTGCTCAGTGGCTTCATACCTGACCTTTCATCTTCCATGGAGAATCTCAGTGAACTCAACATGACCAACAATGAGTTATATGGAAAGTTACCTGACCAAATGCTCAAGAAGTTTGGTGCTGAAAGCTTCTATGGAAATGAGGGTCTCTGTGGTGCAAGCCCACTACCTGTTTGTTCATTTGCCAATGAGAATTCTCCTCCTAATTATGGTGGTGAAGATGGTCATGATGATGATTTGGGACAAACTGTTCCTTCAAATCCAAGCTCAATGCCACAAACAAGTGAGGTTGCAAGGCCAGGAACACCACACCACCATCATAAAGGGTTAAGCCCTGGTGCCATTGTAGCCATTGTTTTGGCAAATTGTGTTGCATTGGTGGTGGTAACATCTTTTCTTGTTGCTCAATGTTGTGGAAGAGAAAGAGGGTCTAATTCTGGTTCCTATGTTGGAAGTGAGAGTGGTAAGAGGAAGAGTAGTGGAAGTAGTACTAGCGGCGGCTACGGCAGTGAAAAGAACAAGAACAAGAACAGGAACAAGAACAAGAAGGTTTATGCAAATGGTGTTGTTGTTAATGGTGGTGGTGATAGTGATGGAACTAGTGGAAGTGATGGAAGTAAGCTTGTGTTCTTTGATAGGAGGAACCAGTTTGAGCTTGAGGATCTGCTAAGAGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTGTATAGGGCAGTGCTTGATGATGGTTGCACTGTTGCAGTTAAAAGGCTTAAAGATACAAACCCTTGTGTAAGGCATGAATTTGAACAATACATGGAGGTTATAGGGAGGTTGAAGCATCCAAACATTGTTAGACTCAGAGCATATTACTATGCTAAGGAAGAGAAGCTTCTTGTCTATGATTATCTCCCCAATGGAAGCCTCCATGCTCTTCTTCATGGGAACCGTGGCCCTGGAAGAATTCCATTAGATTGGACCACAAGAATAAGCTTGGTGTTAGGAGCAGCTAGAGGCCTTGCTAGGATCCATGCAGAGTATAGTTCAGCCAAAGTGCCTCATGGAAATGTGAAATCTTCCAATGTGCTTCTTGACAAGAATGGTGTTGCTTGCATCTCAGACTTTGGTTTATCCCTTCTATTGAACCCTGTTCATGCCATTGCAAGGTTGGGAGGGTACAGAGCTCCGGAACAGGCCGAACAAAAGAGGCTGTCTCAGCAGGCTGATGTGTATAGTTTTGGTGTCTTGCTTTTGGAAGTCCTAACTGGAAGGGCTCCCTCATCGGCTTACCCTTCTCCTGCTCGCCCTCGTGGTGGCCCAGATGACGAGGAAGAACTTGCTTTGGATCTTCCTAAATGGGTTCGGTCGGTCGTGAAGGAAGAGTGGACCGGTGAGGTGTTTGATCAGGAGTTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTTTCAATGCTGCATGTTGGGTTGGCTTGTGTGGCGCCGCAGCCGGAGAAGAGGCCAACGATGGCAGAAGTTGCAAAGATGATTGAAGAGATCAGGGTGGAGCAATCACCCCTTGGAGAGGACTATGATGAATCAAGGAATTCACTTTCACCTTCCATTCCCACCACTGAAGATGGTATAGCTTAA 2139 0.4745 MNKLLFFTIITTIIIVLTPQQALSHHNDTHALTLFRLQADIHGHLLPNWTGADACSLAAPWRGVSCSPNNRVTTLSLPSLNLRGPLTPLSFLTHLRFLDLHDNRLNGTIAPLISNCTNLVLLYLSGNDLSGEIPPEISSVTGLLRLDLSGNNIGGKVPKELLNLTKLLTLRLQDNVLSGFIPDLSSSMENLSELNMTNNELYGKLPDQMLKKFGAESFYGNEGLCGASPLPVCSFANENSPPNYGGEDGHDDDLGQTVPSNPSSMPQTSEVARPGTPHHHHKGLSPGAIVAIVLANCVALVVVTSFLVAQCCGRERGSNSGSYVGSESGKRKSSGSSTSGGYGSEKNKNKNRNKNKKVYANGVVVNGGGDSDGTSGSDGSKLVFFDRRNQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDTNPCVRHEFEQYMEVIGRLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYSSAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEQKRLSQQADVYSFGVLLLEVLTGRAPSSAYPSPARPRGGPDDEEELALDLPKWVRSVVKEEWTGEVFDQELLRYKNIEEELVSMLHVGLACVAPQPEKRPTMAEVAKMIEEIRVEQSPLGEDYDESRNSLSPSIPTTEDGIA* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3439 712 CDD STKc_IRAK 404 682 - -
Amo12g3439 712 Pfam Protein kinase domain 402 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3439 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 703 - -
Amo12g3439 712 Gene3D Phosphorylase Kinase; domain 1 375 473 - -
Amo12g3439 712 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Amo12g3439 712 SUPERFAMILY Protein kinase-like (PK-like) 402 680 IPR011009 -
Amo12g3439 712 MobiDBLite consensus disorder prediction 317 346 - -
Amo12g3439 712 MobiDBLite consensus disorder prediction 317 377 - -
Amo12g3439 712 PANTHER LRR RECEPTOR-LIKE KINASE 7 703 - -
Amo12g3439 712 MobiDBLite consensus disorder prediction 256 271 - -
Amo12g3439 712 SUPERFAMILY L domain-like 26 209 - -
Amo12g3439 712 ProSiteProfiles Protein kinase domain profile. 398 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3439 712 Gene3D Transferase(Phosphotransferase) domain 1 474 700 - -
Amo12g3439 712 MobiDBLite consensus disorder prediction 238 282 - -
Amo12g3439 712 MobiDBLite consensus disorder prediction 686 712 - -
Amo12g3439 712 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Amo12g3439 712 Gene3D Ribonuclease Inhibitor 142 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3439 Amo-Chr12 123548311 123551249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3439 26 708 Receptor kinase-like Gene Family AT2G36570 65.652 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo12g3439 Pkinase 9.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3439 - - gmx:102660494 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3439 12 123548311 123551249 Amo12g3439 12 123548311 123551249 ECH