Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3434 ATGGATTGGAATAATAATGGCAGCACTAGATCCTTTGTTCCTCGACCTGATTCTTCTTTCAGCTTCCTCTACAACTATACCTACACCAACCCTTACCCAGAAATGAAACAAGGAGGATCATCAGCAATGGTGGAGGGTCCATCATCATCAGCAACATTATCAATGGAGAAAATGAACAACAACAACAACAACTTAATGATGGAGAAGAAAAAGAGGCTAACAAATGAACAGCTGGAGTCACTAGAAAGAAGCTTCCAGAAGGAAATAAAGTTGGATCCTGATCGGAAGATGAAGCTATCAAAGGAATTAGGGCTTCAACCTCGCCAAATTGCTGTGTGGTTCCAAAATAGACGTGCAAGGTGGAAGGCTAAGCAACTTGAGCATTTGTATGATTCTCTCAAACAAGAGTTTGATCTCATTTCCAAGGAGAAACAAAAGCTTCAACAAGAGGTAATGAAATTGAAGGGAATACTGAGAGATCATCAAGGTTGTAGAACTACTCAGATATCAAATTACACTGAAATCTCTGGCGGAGGTGGTGGTGGTGGTGATGAGACTACTGTAGAAAGCACTTCTGAGGCCCTACGCTGTTCCAACACCAACAAATCATCATCAATTTCAAGAGCTACTGCTTCCATTGTTCATAATCATAATAATAATAATAATAATAATGGAAATTGCTCTTTCACTGTTGAAGACTACAACACTACAGTTCCACCAACAGTTCTTCCCTATTGGCCTGCTGTTCCTTATTACCCTTAA 762 0.399 MDWNNNGSTRSFVPRPDSSFSFLYNYTYTNPYPEMKQGGSSAMVEGPSSSATLSMEKMNNNNNNLMMEKKKRLTNEQLESLERSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEFDLISKEKQKLQQEVMKLKGILRDHQGCRTTQISNYTEISGGGGGGGDETTVESTSEALRCSNTNKSSSISRATASIVHNHNNNNNNNGNCSFTVEDYNTTVPPTVLPYWPAVPYYP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3434 253 Coils Coil 116 150 - -
Amo12g3434 253 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Amo12g3434 253 Pfam Homeobox associated leucine zipper 124 158 IPR003106 GO:0006355|GO:0043565
Amo12g3434 253 Coils Coil 64 84 - -
Amo12g3434 253 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 239 - -
Amo12g3434 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 239 IPR045224 GO:0003700
Amo12g3434 253 Gene3D - 68 129 - -
Amo12g3434 253 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Amo12g3434 253 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Amo12g3434 253 SMART HOX_1 67 128 IPR001356 GO:0003677
Amo12g3434 253 SUPERFAMILY Homeodomain-like 54 126 IPR009057 -
Amo12g3434 253 CDD homeodomain 69 125 IPR001356 GO:0003677
Amo12g3434 253 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Amo12g3434 253 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3434 Amo-Chr12 123507431 123509418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3434 1 154 Homeobox Transcription Factor Family AT5G03790 52.695 1.04e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo12g3434 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3434 - - aip:107628062 373.244