Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3433 ATGGTGCTCAAGACCGAACTTTGCCGTTTCAGCGGCCAGAAGATCTACCCTGGCAAAGGCATCAGATTCGTCCGTGGTGATTCACAGGTCTTTCTGTTTGCCAATTCCAAGTGCAAGAGGTACTTCCACAACAGATTGAAGCCGTCGAAGCTTACATGGACAGCCATGTATAGGAAGCAACATAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAGAAGCGTCGTGCCACCAAGAGGCCTTACTCCAGGTCCATTGTTGGTGCCACTTTGGAAGTTATCCAGAAAAGGAGGACTGAGAAGCCGGAGGTTCGAGATGCTGCTAGAGAAGCTGCTCTTCGTGAAATCAAAGAGAGGATCAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCAGAAACTACGGCAAAGTCCCAAAAGTCCCAAGGCAAAGCTAATGTTTCCAAGGGTGCTCAACCTAAAGGCCCTAAGCTCGGCGGTGGTGGCGGCAAGCGCTGA 495 0.4949 MVLKTELCRFSGQKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKKRRATKRPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETTAKSQKSQGKANVSKGAQPKGPKLGGGGGKR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3433 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Amo12g3433 164 PANTHER LOW QUALITY PROTEIN: 60S RIBOSOMAL PROTEIN L24-LIKE 1 164 - -
Amo12g3433 164 MobiDBLite consensus disorder prediction 117 136 - -
Amo12g3433 164 SMART 4TRASH 8 46 IPR011017 -
Amo12g3433 164 Coils Coil 112 136 - -
Amo12g3433 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Amo12g3433 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Amo12g3433 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Amo12g3433 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Amo12g3433 164 Gene3D - 69 139 - -
Amo12g3433 164 MobiDBLite consensus disorder prediction 117 164 - -
Amo12g3433 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3433 Amo-Chr12 123503519 123505543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3433 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 83.439 1.44e-86 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3433 K02896 - gmx:100499884 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3433 12 123503519 123505543 Amo12g3433 12 123503519 123505543 ECH