Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3432 ATGGGGGATAATCAGCCGGAAGAAGAGAGAACCACCGATAGCAGCGATTTTACGTCGGAGGATGAGGGAACGGAGGACTACCGGCGCGGCGGCTACCACGCCGTCAGAATCGGCGACACCTTCAAGAATGGCCGCTACGTCGTTCAGAGCAAGCTTGGTTGGGGCCACTTCTCCACTGTCTGGCTCGCTTGGGACACGCAAAACTCTAACTATGTAGCTCTGAAGGTTCAAAAGAGTGCTCAGCATTACACTGAGGCGGCAATGGATGAGATAACAATTTTGCAACAGATTGCGGAGGGTGACCCAGAGGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCGAATGGACAGCATGTCTGCATGGTCTTTGAATACCTTGGCGATAATCTATTAACTCTTATAAAGTATTCTGATTACCGCGGGATGCCTATTAGTAGGGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATTATACATACTGACTTGAAACCCGAAAACATCCTTCTCTTATCAATGATAGATCCGTCCAAAGATCCTAGAAAGTCGGGCACTCCTCTCATTCTTCCAAATAGTAAAGATAAGACAGTGCTAGAGTCTGGAGGTGCAAAAGACCTGAAAACATCAAATGGGGATTTGCTCAAGAATCATAAGAAAAAAATTAAAAGAAAAGCTAAGCAGGCAGCACACGGATGTGTGGAGAAGGAAGCTTCAGAAGGAGTTGATGGTAATCCTGAAACCTCTGGTGCCATAGAATCGTCTCCAAATGCAAGTTCTGCAAAAGAACAAGCTTCCAGTTCTACAGGGACCCATCGGTTATCAGATGCTGATGGAACAAAGTCAAAAGAACAGAGTGGTAAAAGGGGAAGCCGTTCAATGAGACAAAAGCTGCTGGCATCAGCTGATCTGAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAGGTGATCCTTGGGTCGAAGTATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTCGAGCTTGCCACGGGAGATGTTCTATTTGATCCTCACAGTGGTGACAACTTCGATCGGGATGAGGACCACTTGGCATTAATGATGGAACTTCTTGGAATGATGCCGCGGAAGATTGCATTAGGAGGCCGTTACTCTCGCGATTTCTTTAATAGATATGGGGATCTAAGGCATATCAGGCGATTACGGTTCTGGCCCTTGAACAAGGTTCTCATGGAGAAGTATGATTTTAGCGAGCGAGATGCAAATGACATTACTGAGTTTCTGGTTCCGATTCTAGACTTTGTTCCCGAGAAACGGCCAACTGCTGGGCAGTGCCTTCAACATCCGTGGATCAATGCCGGTCCACGGCTCTTGGAGCCATCCGTCGCCTCTTCTGATCACAGCCTGCCTGGAGCCAACGCTGGCATTTCTGACCAAAAGAAAAAGGACAAAGATGATAGGGAGGCCATGGAAGCAGGAATGGGAAACATAGCAATCAACACAGATACCAAATCAGTCATGGCTTCCCCATCTAAGAAACTCTTCCAAGGAAGCCATAGCCACAAGTAG 1656 0.4583 MGDNQPEEERTTDSSDFTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQSKLGWGHFSTVWLAWDTQNSNYVALKVQKSAQHYTEAAMDEITILQQIAEGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPISRVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGTPLILPNSKDKTVLESGGAKDLKTSNGDLLKNHKKKIKRKAKQAAHGCVEKEASEGVDGNPETSGAIESSPNASSAKEQASSSTGTHRLSDADGTKSKEQSGKRGSRSMRQKLLASADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSERDANDITEFLVPILDFVPEKRPTAGQCLQHPWINAGPRLLEPSVASSDHSLPGANAGISDQKKKDKDDREAMEAGMGNIAINTDTKSVMASPSKKLFQGSHSHK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3432 551 PANTHER SERINE KINASE-LIKE PROTEIN 13 543 - -
Amo12g3432 551 Pfam Protein kinase domain 46 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3432 551 Pfam Protein kinase domain 312 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3432 551 SMART serkin_6 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3432 551 MobiDBLite consensus disorder prediction 506 520 - -
Amo12g3432 551 Gene3D Transferase(Phosphotransferase) domain 1 129 481 - -
Amo12g3432 551 Gene3D Phosphorylase Kinase; domain 1 22 128 - -
Amo12g3432 551 MobiDBLite consensus disorder prediction 290 305 - -
Amo12g3432 551 MobiDBLite consensus disorder prediction 262 289 - -
Amo12g3432 551 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Amo12g3432 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Amo12g3432 551 CDD STKc_SRPK 35 480 - -
Amo12g3432 551 SUPERFAMILY Protein kinase-like (PK-like) 41 492 IPR011009 -
Amo12g3432 551 MobiDBLite consensus disorder prediction 242 256 - -
Amo12g3432 551 ProSiteProfiles Protein kinase domain profile. 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3432 551 MobiDBLite consensus disorder prediction 194 309 - -
Amo12g3432 551 MobiDBLite consensus disorder prediction 527 544 - -
Amo12g3432 551 MobiDBLite consensus disorder prediction 490 551 - -
Amo12g3432 551 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 543 - -
Amo12g3432 551 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3432 Amo-Chr12 123496476 123501444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3432 10 537 EF-hand Containing Proteins AT5G22840 69.303 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Amo12g3432 Pkinase 2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3432 K08832 - gmx:100803070 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3432 12 123496476 123501444 Amo12g3432 12 123496476 123501444 ECH