Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3425 ATGGCGGCGGCGACGGTGGTTCCGGCGACGACAGTGGTTCCGGCGACGGCGTCGCTCTACGTTGGAGACCTGCACCCTGATGTGGTAGACAGCGAGCTGTTCGAGGCGTTCTCGGAGTTCAAGAGCATCGCCTCCGTTCGAATCTGCAAAGACTCTGCCACAGGGAGGTCACTCTGTTACGGTTACGTCAACTTCATTTCTCACCAAGACGCAAGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGCGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCAAAGTTGTGATGTCGGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATCGAGAAGTTGAATGGCATTACTGTTAAAGATAAGCAGATATATGTTGGGAATTTTGTGAAAAAGAGTGAACGCATACTGCCTGATCCTGAAGCCAAATATACAAATATATACATCAAGAATTTGGACTCAGATATTACGGAAGAACTCCTTCAGAAGAAGTTTTCTTCTTTTGGAAAAATTATGAGCCTGGCTATAGCAAAAGATGCCAATGGGATGTCAAAGGGTTTTGCATTTGTGAACTATGATAACCCAGAGGAAGCTAAACAGGCAATGGAAGCAATGAATGGATCACAATTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCTGTTTGAAGAGAAACGTAAGGAACACATCTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGTGTCACTGATGACCAACTACGAGAGCACTTCAGTGCATGTGGCACAATTACATCTGCTAAAGTCATGCAAGATGAGAAAGGTGTAAGCAAGGGGTTTGGCTTTGTCTGCTTCTCTACCCCTGAGGAGGCCCATAAAGCAGTGAACACTTTTCATGGATGCATGTTCCATGGTAAACCACTATATGTTGCTCTTGCCCAGAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCTACTTTTCTCAGCAATTACCAGGGCTAGGTGCACCTTCAAATGCAGTTATTCCTGGTGGATATCCTCGTTTCTACTATACTGGTGGTGTTCTTTCACATGTCCCTTCTCAACCTGGGATGATGTATCAACATCTTGGATCGAGGTCAGGTTGGAGGGCTAATAATGCTTTTGCACCTCCCACTAGATCATTTCAGCAGTCTGCAGCTCCTAACGTTTCAAACAATACTAAGCAGCATAGGCAAAACAGAGGTAGGATGAACGGACACACAAATTCACATGGAAAAGCATACTCTTCTCAGTCAGCAGCCTCTTCTAAAGACTCAAGTGCCCAGCAGTCTGGACAGGCTATTTTTGTTCTCGGTGGACACCGGAATGTGATGGAAAAAGGATCTGGAATTTCATCCTCTGGAGGGTCTCAGGGATCAGAAATGCTGCATAGTATGCTTGCTACTGCTGTCCCCGAGCAACAGAAACAGATACTTGGCGAGCGTCTTTTCCCACTTATCAAGAAACTCAAGCCTAACTTGGCACCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTGCTCCTGGAATCACCGGAATCACTTTCTGCAAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAATTCCACCACCAAGGTTTCTGGCCAGGAAGCATTTCATCCGAACTTGCTTTCGGCCGAAGTTACCGTTAACTGA 1875 0.4459 MAAATVVPATTVVPATASLYVGDLHPDVVDSELFEAFSEFKSIASVRICKDSATGRSLCYGYVNFISHQDASRAIELKNHSLLHGKVIRVMWSRRDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKFGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGITVKDKQIYVGNFVKKSERILPDPEAKYTNIYIKNLDSDITEELLQKKFSSFGKIMSLAIAKDANGMSKGFAFVNYDNPEEAKQAMEAMNGSQFGSKILYVARAQKKAEREQILHHLFEEKRKEHILKYKGSNIYVKNINDSVTDDQLREHFSACGTITSAKVMQDEKGVSKGFGFVCFSTPEEAHKAVNTFHGCMFHGKPLYVALAQRKEDRQTQLQLYFSQQLPGLGAPSNAVIPGGYPRFYYTGGVLSHVPSQPGMMYQHLGSRSGWRANNAFAPPTRSFQQSAAPNVSNNTKQHRQNRGRMNGHTNSHGKAYSSQSAASSKDSSAQQSGQAIFVLGGHRNVMEKGSGISSSGGSQGSEMLHSMLATAVPEQQKQILGERLFPLIKKLKPNLAPKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNSTTKVSGQEAFHPNLLSAEVTVN* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3425 624 CDD RRM1_I_PABPs 18 97 - -
Amo12g3425 624 SMART rrm2_1 300 372 IPR003954 GO:0003676
Amo12g3425 624 SMART rrm2_1 106 178 IPR003954 GO:0003676
Amo12g3425 624 SMART rrm2_1 18 91 IPR003954 GO:0003676
Amo12g3425 624 SMART rrm2_1 197 269 IPR003954 GO:0003676
Amo12g3425 624 PANTHER RNA BINDING PROTEIN 521 609 - -
Amo12g3425 624 PANTHER RNA BINDING PROTEIN 14 502 - -
Amo12g3425 624 Gene3D - 289 385 IPR012677 -
Amo12g3425 624 SUPERFAMILY RNA-binding domain, RBD 17 184 IPR035979 GO:0003676
Amo12g3425 624 Gene3D - 106 185 IPR012677 -
Amo12g3425 624 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 527 604 IPR002004 GO:0003723
Amo12g3425 624 SUPERFAMILY RNA-binding domain, RBD 187 279 IPR035979 GO:0003676
Amo12g3425 624 Coils Coil 623 624 - -
Amo12g3425 624 SMART rrm1_1 197 269 IPR000504 GO:0003723
Amo12g3425 624 SMART rrm1_1 300 372 IPR000504 GO:0003723
Amo12g3425 624 SMART rrm1_1 18 91 IPR000504 GO:0003723
Amo12g3425 624 SMART rrm1_1 106 178 IPR000504 GO:0003723
Amo12g3425 624 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 17 600 IPR006515 GO:0003723
Amo12g3425 624 SUPERFAMILY RNA-binding domain, RBD 297 392 IPR035979 GO:0003676
Amo12g3425 624 MobiDBLite consensus disorder prediction 439 499 - -
Amo12g3425 624 Gene3D - 186 288 IPR012677 -
Amo12g3425 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 376 IPR000504 GO:0003723
Amo12g3425 624 Pfam Poly-adenylate binding protein, unique domain 535 599 IPR002004 GO:0003723
Amo12g3425 624 Gene3D - 9 105 IPR012677 -
Amo12g3425 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Amo12g3425 624 PANTHER POLYADENYLATE-BINDING PROTEIN 521 609 - -
Amo12g3425 624 PANTHER POLYADENYLATE-BINDING PROTEIN 14 502 - -
Amo12g3425 624 SUPERFAMILY PABC (PABP) domain 531 609 IPR036053 GO:0003723
Amo12g3425 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 265 IPR000504 GO:0003723
Amo12g3425 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Amo12g3425 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 89 IPR000504 GO:0003723
Amo12g3425 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 369 IPR000504 GO:0003723
Amo12g3425 624 Gene3D - 525 615 - -
Amo12g3425 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Amo12g3425 624 SMART poly_2 539 602 IPR002004 GO:0003723
Amo12g3425 624 CDD RRM4_I_PABPs 298 376 - -
Amo12g3425 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Amo12g3425 624 CDD RRM2_I_PABPs 103 179 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3425 Amo-Chr12 123418879 123423085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3425 1 621 Eukaryotic Initiation Factors Gene Family AT2G36660 52.782 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3425 K13126 - gmx:100779547 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3425 12 123418879 123423085 Amo12g3425 12 123418879 123423085 ECH