Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3422 ATGTCTGAACCCGCCGCCACCGACGATAAAACATCTTCTCCGCCACCGCCACCAGCTCAACACAAGAGCTGGGCCGACGAAGCCGACGATGATGCCGAAGCCGCCAATGAAACAACCGCCCCCACCACAGCGGTTCCATCTAGCTCATCGCCGTCGCTCAACGTCGACGAATTATCGATCGACGAAAACAAGAAACCTCCGAAGCTATTAGACGATCCGGAAGACTCCAACATCCAAGCGGTTACTTCTGGCGACACGCCGTACACCTCGGCGGCGACGTTCGAGGATCTGAATTTGTCGGCGGAGCTTTTGAGAGGACTCTACGTTGAGATGAGGTTCCAGAAACCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCTTGAATCCGCCGCATCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACGTGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGGTGCAAGCTCCTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGGAGTGTGCCGTTCCGACAGATAGCAGGGATTCACTTCCAATTCAAAAACGGGAGCCAATTAAGGCTCAGGTGGTTATTGGGACTCCTGGCACCATAAAGAAGTGGATTTCTTTCAAGAAATTGGGTGTGACCAGATTGAAGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGTAAAAATAGAAAAATTCAATTCTAGCTGCCAGGTTGCAAGTTGTGTTGAAGGAAAATATAATTGTTCCTTGATATTTGAGAAACTTCTTATTTGTGCAGCCGAACAATTGCATCTACTTAAATGTACTGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGACGCAGTGAAGCAGTATAAAGTTCGCTGCCCTGATGAGTTGTCGAAGATTGAGGTGATAAAAGATTACATATTCGAATTAGGAGAAAATGTGGGCCAAACCATCATATTCGTGCGCACGAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTCGACATGGGGTACGAGGTTACATCGATACAAGGTGCTCTTGACCATGAAGAGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCCACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCGGAGTATACACGGGAATTTGAGCCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGTCGATTTGGCCGTAAGGGGGCTGTGTTTAACCTAATATATGATGAAAAAGATGAAAGGCTGATGTCAAAGATCGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGAGAAAAAAGTGTTGAAGACTATAAAGCTGCTCTTAAGGAAGCCGGCTTATTACAATGA 1569 0.4557 MSEPAATDDKTSSPPPPPAQHKSWADEADDDAEAANETTAPTTAVPSSSSPSLNVDELSIDENKKPPKLLDDPEDSNIQAVTSGDTPYTSAATFEDLNLSAELLRGLYVEMRFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSVQAPQALCICPTRELAIQNTEVLRKMGKHTGISSECAVPTDSRDSLPIQKREPIKAQVVIGTPGTIKKWISFKKLGVTRLKILVFDEADQMLAEVKIEKFNSSCQVASCVEGKYNCSLIFEKLLICAAEQLHLLKCTVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDAVKQYKVRCPDELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVDMGYEVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLIYDEKDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQ* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3422 522 SMART helicmild6 378 471 IPR001650 -
Amo12g3422 522 MobiDBLite consensus disorder prediction 1 89 - -
Amo12g3422 522 MobiDBLite consensus disorder prediction 36 57 - -
Amo12g3422 522 PANTHER DEAD-BOX HELICASE DBP80 71 501 - -
Amo12g3422 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 323 IPR014001 -
Amo12g3422 522 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Amo12g3422 522 Pfam DEAD/DEAH box helicase 118 311 IPR011545 GO:0003676|GO:0005524
Amo12g3422 522 Pfam Helicase conserved C-terminal domain 349 471 IPR001650 -
Amo12g3422 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 489 IPR027417 -
Amo12g3422 522 Gene3D - 330 519 IPR027417 -
Amo12g3422 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 512 IPR001650 -
Amo12g3422 522 CDD SF2_C_DEAD 336 480 - -
Amo12g3422 522 SMART ultradead3 112 339 IPR014001 -
Amo12g3422 522 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 501 - -
Amo12g3422 522 Gene3D - 71 329 IPR027417 -
Amo12g3422 522 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3422 Amo-Chr12 123396113 123398971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3422 93 503 Eukaryotic Initiation Factors Gene Family AT1G72730 35.577 1.20e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3422 K18655 - gmx:100778091 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3422 12 123396113 123398971 Amo12g3422 12 123396113 123398971 ECH