Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3407 ATGGCGGTTCCGGGGAGGCGCAACGGCATAAACGAAGATGACGAAGATAACAACCTTTTCGAAGAAGAAGGACTCATCGAACATGAATCCGACACTCCTCCTCACCTCCGTGACCTCTCCGCCGCCGCCCAGCTCGGCGACCTCTCCGCCCTCCGCATCGCCCTAGATAACTTGCAAGGTAGTATCGATGAGCCAGTCGAGGATGGGGATACAGCATTACATTTGACCTGTTTGTATGGCCATTTGGAATGCGCCCAGCTACTTCTAGATAGAGGAGCGAACTTGGAGGCCAACGATGAAGACGGTGCGCTTCCTTTGCACGATGCTTGTGCTGGAGGATATACACAGATAGTCCAACTGCTATTGAACAGAGCTGGTGATGCAGAGATCATAAAAAGGATGCTGGAATCAGTTGATTCCGAGGGTGACACGCCTCTTCATCATGCAGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTCATGGTGCTTCCCCCACCAAGCAAAACTTATATGGAAAGTGCCCGCCAGAGTTACCTGATCCAGGCACAGATGCTAGGAGGCTGTTGGAATCTACCACCATTCCCATGGAAGCTTAA 606 0.5116 MAVPGRRNGINEDDEDNNLFEEEGLIEHESDTPPHLRDLSAAAQLGDLSALRIALDNLQGSIDEPVEDGDTALHLTCLYGHLECAQLLLDRGANLEANDEDGALPLHDACAGGYTQIVQLLLNRAGDAEIIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKQNLYGKCPPELPDPGTDARRLLESTTIPMEA* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3407 201 Pfam Ankyrin repeats (3 copies) 40 124 IPR002110 GO:0005515
Amo12g3407 201 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Amo12g3407 201 ProSiteProfiles Ankyrin repeat region circular profile. 101 130 - -
Amo12g3407 201 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Amo12g3407 201 PRINTS Ankyrin repeat signature 69 84 IPR002110 GO:0005515
Amo12g3407 201 PRINTS Ankyrin repeat signature 157 171 IPR002110 GO:0005515
Amo12g3407 201 PANTHER TANKYRASE-LIKE 1 194 - -
Amo12g3407 201 Gene3D - 33 195 IPR036770 -
Amo12g3407 201 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Amo12g3407 201 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Amo12g3407 201 Pfam Ankyrin repeat 142 172 IPR002110 GO:0005515
Amo12g3407 201 SUPERFAMILY Ankyrin repeat 35 178 IPR036770 -
Amo12g3407 201 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Amo12g3407 201 SMART ANK_2a 101 130 IPR002110 GO:0005515
Amo12g3407 201 SMART ANK_2a 141 170 IPR002110 GO:0005515
Amo12g3407 201 SMART ANK_2a 68 97 IPR002110 GO:0005515
Amo12g3407 201 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 194 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3407 69 183 MAP Kinase Kinase Kinase AT3G58760 33.333 1.73e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3407 - - gmx:100527544 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3407 12 123241644 123243340 Amo12g3407 12 123241644 123243340 ECH