Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3405 ATGTTCCAAAGAAGGTGCATTGTGGTAACAATAACATATGTATTATTTGGATGCATTATTGTGGATCATGGAAGAGCAACAATGGTGAATCTCACACTCCAAGGACAACATCCAAACCCTGAAGCTCTTGTTACACAACTTCATAGTAAGATTAATGCTTCAATAGCAAGAAGGGAGATGTTAGCATCATCATCATCATGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGGCCCAAAACAGACAAAGGCTAGCCGATTGCGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCGAGTTCTACATAGTAACCGATTCGTCAGACAATGATGCTGTAAACCCTAAACCCGGAACCCTAAGATATGCCGTGATTCAAAATGAGCCACTTTGGATAGTGTTTCCTAGTAACATGATGATTAAGCTTTCACAAGAACTCATCTTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTGCACATTGTTGGTGGAGGGTGCATTACTCTTCAATATATTAGCAATGTTATCATACATAACATTCACATTCACCATTGTCACCCCTCAGGTAATGCTATGGTGCGATCGAGTCCAGAGCACTATGGATACCGCACTGAATCGGACGGTGATGGCATATCCATATTTGGATCGCATGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCAACTGCCATCACTGTGTCCAACAACCACTTTTCTCATCACAATGACGTAATGCTCTTGGGCCATAGTGACCACTACTTACCTGACTCAGCCATGCAGGTTACCATTGCCTTTAACCATTTCGGCGAAAAACTCGTCCAGCGCATGCCACGTTGCAGGCTAGGATATGTTCACATAGTCAATAACGACTTCACTGCTTGGCAGATGTATGCAATCGGGGGCAGTGGATCCCCTACTATTAATAGTCAGGGGAATCGATACACTGCTCCGGACAACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGGGAAGGCGAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGATGTGATGGTGAATGGAGCATTCTTTGTTCCATCAGGGGAAGGTGCTGAGGTTAAGTATGAGAAGGCTTATAGTGTGGAGCCTAAGTCTGCGGATCGCATTTCATTGCTTACTATGTCTGCTGGAGTTCTTGGTGTGGCTAGGGACAATAACCTTGGCATGTGGACTAGAGGACCCAACGATGGTGGCAGTTATATTTCAACAAACGGTCCAGAATTCACTGATGAAATGTCAAAGGCTGCAATGCTGTTTCCACCTTCACATACTTTCACATTTGTATCTGTTCTTGTTACAATGCTCTGCTTGTTATCTCACACAATTACTCCCCTAATAACATTAGTACTATAA 1449 0.4465 MFQRRCIVVTITYVLFGCIIVDHGRATMVNLTLQGQHPNPEALVTQLHSKINASIARREMLASSSSCLTGNPIDDCWKCDPNWAQNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNAMVRSSPEHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDFTAWQMYAIGGSGSPTINSQGNRYTAPDNSFAKQVTKRLDVGEGEWTGWNWRSEGDVMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRISLLTMSAGVLGVARDNNLGMWTRGPNDGGSYISTNGPEFTDEMSKAAMLFPPSHTFTFVSVLVTMLCLLSHTITPLITLVL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3405 482 Pfam Pectate lyase 155 334 IPR002022 -
Amo12g3405 482 PANTHER PECTATE LYASE 18-RELATED 3 435 IPR045032 GO:0030570
Amo12g3405 482 SMART amb_all 145 342 IPR002022 -
Amo12g3405 482 SUPERFAMILY Pectin lyase-like 66 398 IPR011050 -
Amo12g3405 482 Gene3D - 70 412 IPR012334 -
Amo12g3405 482 PANTHER PECTATE LYASE 3 435 - -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Amo12g3405 482 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Amo12g3405 482 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3405 Amo-Chr12 123218499 123222025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3405 1 474 Polysaccharide Lyase AT3G53190 69.439 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3405 K01728 - gmx:100815062 771.155