Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3399 ATGGGTGAGGAGGTGAAAGCAATTATTCCCGAGTCTGTGCTTAAAAAGCAGAAGAGGGAGGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCTTAATGCTGCAAAGAAGAAGAGAGCAGAGAGCCGAAAGCTCATTTACAGCAGGGCAAAGCAATATGCAAAGGAATACCAGGAGCAGGAAAAGGAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAGCTCCTGTTTATCATCCGCATCCGTGGTATCAATGCCATGGATCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTCAATGGTGTGTTCTTAAAAGTCAACAAGGCCACAGTGAACATGCTTCACAGGGTTGAGCCATATGTGACCTATGGATACCCAAATCTGAAAAGTGTAAAAGAGCTTATTTACAAGAGGGGCTTTGGTAAGTTGAACAAGCAGAGAATTGCCCTAACCGACAACTCAATCATTGAGAAGGCACTGGGCCAACATGGAATCATCTGCATTGAAGATCTTATCCATGAGATCATAACAGTTGGACCCCATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCATTGGGTGGCTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGAGATGCCGGAAACAGGGAGAACTACATCAATGAGCTTATCAGGAGAATGAATTAG 732 0.4454 MGEEVKAIIPESVLKKQKREEEWALKKKEELNAAKKKRAESRKLIYSRAKQYAKEYQEQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNSIIEKALGQHGIICIEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3399 243 PANTHER 60S RIBOSOMAL PROTEIN L7 5 243 IPR039699 -
Amo12g3399 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Amo12g3399 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Amo12g3399 243 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Amo12g3399 243 Coils Coil 49 73 - -
Amo12g3399 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Amo12g3399 243 Gene3D - 84 188 IPR036919 -
Amo12g3399 243 Gene3D - 189 243 IPR036919 -
Amo12g3399 243 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 5 243 - -
Amo12g3399 243 Coils Coil 14 34 - -
Amo12g3399 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Amo12g3399 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3399 Amo-Chr12 123171735 123173393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3399 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.833 1.40e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3399 K02937 - gmx:100813342 396.741