Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3393 ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTAAAGAAAGGTCCATGGAGTCCTGAAGAAGATGCAAAGCTCAAGGAATACATTGACAAACATGGAACTGGAGGAAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGCTTAATTATCTTAGACCCAATATTAAGCATGGAGAGTTTTCTGAAGATGAAGATAGAATGATTTGCTATCTCTTTGCCAGTATTGGAAGCAGATGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACAGACAATGACATCAAGAACTATTGGAATACCAAGCTTAAGAAAAAGATGATGCCAATTATGATGGACCCTTTAACAATGAACAATAATAATAATAAGCCTCATCCCCAAATTACCCTTTTGTCCATCCTCCAAAATTCATCATCAACACAACATTCTCCTTCTCCTCCATCTCCATCTCCTCCACCATTCATATCAAACACAACCGCCACTAATAATAATAATGACACTTATTATTACTACCACCCTCATGAGTCCATTATTTCTTACTCATCATCAAGTGATCCTATCATCAATGCCAATAGTAGTTCTTCTACTTCTTCTGATTCTATCATCTTCCAATCTCAACAACAAGAATCTTATATGGATAATAACACCATTGATAATCAGAATTATCATCAAGAACCAGCTGAACAACTTGGATATTGTGGTGATGATTATTACTATGATTATGGTACCTTTGTGGACCATATAGTTGCAAATAATAATCATAATAATTACCACTATAGTGGGGTAGAAGATGCACAAAAGTTTATGCATTTTAATGGTGGCAGGGGTAATGTGGGGACAGAGAAACAAAGTAGTACCTTGTTGGAAGAAAATCCATTGGATAATTATGGAATAGATGAGACTAAAGAGCTTGTATTAAGCAACAATAACTTTTTGTTTGATCACAACTAG 981 0.3619 MGRAPCCDKANVKKGPWSPEEDAKLKEYIDKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEDEDRMICYLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMPIMMDPLTMNNNNNKPHPQITLLSILQNSSSTQHSPSPPSPSPPPFISNTTATNNNNDTYYYYHPHESIISYSSSSDPIINANSSSSTSSDSIIFQSQQQESYMDNNTIDNQNYHQEPAEQLGYCGDDYYYDYGTFVDHIVANNNHNNYHYSGVEDAQKFMHFNGGRGNVGTEKQSSTLLEENPLDNYGIDETKELVLSNNNFLFDHN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3393 326 PANTHER TRANSCRIPTION FACTOR RAX3 1 239 - -
Amo12g3393 326 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo12g3393 326 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo12g3393 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Amo12g3393 326 SMART sant 67 115 IPR001005 -
Amo12g3393 326 SMART sant 13 64 IPR001005 -
Amo12g3393 326 Gene3D - 7 68 - -
Amo12g3393 326 CDD SANT 16 62 IPR001005 -
Amo12g3393 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Amo12g3393 326 MobiDBLite consensus disorder prediction 146 169 - -
Amo12g3393 326 Gene3D - 69 140 - -
Amo12g3393 326 CDD SANT 70 113 IPR001005 -
Amo12g3393 326 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo12g3393 326 PANTHER OS09G0431300 PROTEIN 1 239 - -
Amo12g3393 326 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo12g3393 326 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3393 Amo-Chr12 123126374 123129092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3393 1 118 MYB Transcription Factor Family AT5G57620 88.136 9.16e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g3393 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3393 K09422 - gmx:100820139 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3393 12 123126374 123129092 Amo12g3393 12 123126374 123129092 ECH
Amo16g1893 16 50687864 50689426 Amo12g3393 12 123126374 123129092 PCT
Amo12g3393 12 123126374 123129092 Amo16g1893 16 50687864 50689426 PCT