Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3390 ATGTCACAACAAGATTCTGAGGAAGAGATAAAGACCATTGAACATTGGAAATGGTCTGAAATGCAAGGACTTGAGCTTGTTCCAGGAGAATCACAACCACCACCACCACCAACAACAACAAGAACAGCATCAATGGAGCAAGAACAATACAAGGAGCAAGAAAAAATGGTGGGGAAGGTCACTTCAGAAGCAAATAGAGATGGTGGTGCTGCTACTAGTACTAGTGGTGGTGGAGAAAAAGGTGAAAGTGTTGAACCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATTCATTGGATCACATCCTAATGGGAATTGGAACAATTGGAGCAATGGTACATGGATGTTCATTGCCACTGTTCTTAAGGTTCTTTGCTGATCTTGTGAACTCTTTTGGTTCCAATGCCAATAATGTGGACAAGATGACCCAGGAAGTTGTTAAGTATGCATTTTACTTCCTTGTTGTTGGTGCTGCTATATGGGCATCATCATGGGCAGAGATTTCATGTTGGATGTGGACAGGTGAGAGGCAATCAACAAGGATGAGGATCAAGTATCTTGAAGCTGCTTTAGAACAAGACATTCAATTCTTTGACACAGAGGTTAGAACCTCAGACGTTGTTTCTGCAATCAACACTGATGCTGTCATGGTCCAAGATGCCATTAGTGAGAAGTTGGGTAATTTCATTCACTACTTTGGCACATTTATTTCTGGGTTTGCTGTGGGATTCAGTGCTGTGTGGCAATTAGCACTGGTCACTCTTGCTGTAGTTCCTATGATAGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTGCTAAAAGCCAAGAAGCTCTTTCTCAAGCAGGCAACATTGTTGAACAGACTGTTGTTCAAATCAGAGTGGTGTTGGCATTTGTTGGGGAGAATAGAGCACTGCAAGGTTACTCATCTGCACTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGCAAAGGGAATGGGATTGGGTGCTACTTACTTTGTTGTTTTCTGCTGCTATGCTCTTTTGCTTTGGTATGGTGGATATCTAGTTAGGCATCACTACACCAATGGAGGATTAGCCATTGCAACCATGTTTGCTGTTTGTATTGGTGGATTGGCTTTAGCCCAGTCTGCACCAAGCATAGCTGCATTTACAAAGGCCAGAGTGGCAGCTGCGAAAATTTACCGTGTGATCGATCACAAGCCGGCTATAGAGAGAAACAATGAATCCGGTGTGGAGTTAGACAGTGTCACAGGACTAGTGGAGCTGAAAAATGTGGACTTTTCATATCCATCTAGGCCAGATGTTAGGATTCTCAACAATTTCACCTTGAGCGTGCCTGCCGGCAAGACCATAGCCTTGGTGGGAAGCAGCGGCTCCGGAAAGAGCACGGTTGTGTCCCTCATAGAGAGATTCTATGACCCTTCATCAGGACAAGTTTTGTTAGATGGGAATGATGTTAAGAGTTTGAAGCTAAAATGGTTGAGGCAGCAAATAGGACTAGTGAGCCAAGAACCGGCTTTGTTTGCGACAACAATTAGAGAAAACATACTCTTAGGAAGATCTGATGCTGACCAAGTTGAGATTGAAGAAGCTGCAAGAGTAGCCAATGCTCATTCTTTCATTATCAAACTTCCAGAAGGTTATGAAACACAGGTAGGTGAAAGGGGGTTGCAACTTTCAGGAGGCCAAAAGCAGAGAATTGCTATAGCAAGGGCAATGCTGAAGAACCCAGCAATTCTTCTCCTAGATGAGGCGACAAGTGCGTTGGACTCCGAGTCAGAAAAGCTTGTGCAAGAAGCACTTGATAGGTTTATGATTGGTAGAACAACACTTGTGATTGCACACCGCCTTTCCACGATTCGCAAAGCTGATCTTGTTGCAGTACTTCAGCAAGGAAGTGTATCAGAAATTGGAACTCATGATGAGCTTTTCGCCAAAGGCGAAAATGGAGTCTATGCCAAGCTTATCAGGATGCAAGAGGCTGCCCATGAAACTGCCATGAGTAATGCTAGAAAGAGTAGTGCAAGGCCTTCGAGTGCAAGAAACTCTGTAAGTTCACCTATTATTGCTCGGAACTCTTCTTACGGCCGGTCACCATACTCAAGAAGGCTATCTGACTTCTCCACATCGGATTTTAGTCTTTCCATTGATGCATCACATCCAAATTACAAGCTCGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTTTGGAGACTTGCAAAGATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCTATAGGTTCAGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTTCTCAGTGTCTATTACAATCCGAACCACAGACACATGATCCGAGAAATAGAAAAGTACTGCTACTTGTTAATAGGACTTTCATCCGCAGCTCTTATCTTCAATACATTGCAGCATTTCTTCTGGGATATTGTTGGTGAAAATCTCACAAAACGAGTGAGGGAGAAAATGTTCAGTGCAGTGCTCAAGAACGAAATGGCATGGTTCGATCAGGAAGAAAATGAGAGTGCTAGAATTGCAGCAAGGCTATCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCGGTAATTGTGCAGAACACTGCACTTATGTTGGTTGCTTGCACTGCAGGGTTTGTACTACAGTGGCGCCTTGCTCTCGTCCTTGTAGCCGTCTTCCCAGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTTGAAGCTGCTCATGCTAAGGCCACACAACTTGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCAGCCTTTAATTCGGAAAAGAAAATCGTAGGACTTTTCGTCTCAAACCTTGAAATTCCTCTAAGACGCTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGGATAGCACAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCACGGAATATCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTCATGGTCTCGGCTAATGGTGCTGCTGAAACTTTAACTCTGGCTCCTGACTTCATCAAGGGGGGTAGAGCCATGAGGTCTGTCTTTGAACTCCTTGACCGCAGAACTGAAATTGAGCCGGATGATTCTGATGCTACACCTGTTCCTGACCGGCTTCGTGGTGAAGTTGAGCTAAAGCATGTTGACTTCTCTTATCCTACTCGGCCGGATATGCCTGTTTTCCGGGACCTCAGTCTTCGTGCAAGAGCAGGTAAAACTCTAGCCCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCACTTATCCAGAGGTTCTATGATCCATCCTCCGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAACCTTAAGTCCCTAAGAAGGCACATTGCTGTGGTGCCTCAAGAACCATGCTTGTTTGCTACTTCAATATATGAAAACATTGCTTATGGCCATGACTCGGCTACTGAAGCCGAGATCATTGAGGCTGCTACTCTTGCCAACGCGCACAAGTTCATATCCGGCCTGCCTGAAGGATACAAAACATTTGTTGGGGAGAGAGGAGTTCAGCTATCAGGAGGACAAAAGCAAAGAATAGCTATTGCTAGAGCTTTTGTGAGGAAGGCAGAACTCATGCTTCTCGACGAAGCAACAAGTGCACTAGATGCAGAATCTGAGAGGTCTGTGCAGGAGGCTCTAGACCGAGCTTGCACTGGAAAAACAACTATCATAGTAGCTCACAGACTATCCACAATCAGGAATGCCAATCTCATTGCAGTGATTGATGATGGGAAAGTAGCAGAACAAGGATCACATTCACAGTTGCTGAAGAATCATCCTGATGGGATCTATGCAAGAATGATTCAGTTACAAAGATTCTCAAACAACCAAGTCATTGGTGTTGCCTCAAGTTCAAGCTCCTCAACAAGACCAAACGATGATCAAAGGGAAAGCTAG 4050 0.4444 MSQQDSEEEIKTIEHWKWSEMQGLELVPGESQPPPPPTTTRTASMEQEQYKEQEKMVGKVTSEANRDGGAATSTSGGGEKGESVEPVGFGELFRFADSLDHILMGIGTIGAMVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALEQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYFGTFISGFAVGFSAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSAKSQEALSQAGNIVEQTVVQIRVVLAFVGENRALQGYSSALRIAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVCIGGLALAQSAPSIAAFTKARVAAAKIYRVIDHKPAIERNNESGVELDSVTGLVELKNVDFSYPSRPDVRILNNFTLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGNDVKSLKLKWLRQQIGLVSQEPALFATTIRENILLGRSDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEAAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSIDASHPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALIFNTLQHFFWDIVGENLTKRVREKMFSAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFVSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDSDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPSSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATSIYENIAYGHDSATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACTGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFSNNQVIGVASSSSSSTRPNDDQRES* 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3390 1349 ProSitePatterns ABC transporters family signature. 1222 1236 IPR017871 GO:0005524
Amo12g3390 1349 Pfam ABC transporter transmembrane region 105 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3390 1349 Pfam ABC transporter transmembrane region 761 1030 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3390 1349 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 104 1326 - -
Amo12g3390 1349 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 393 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3390 1349 Gene3D ABC transporter type 1, transmembrane domain 91 681 IPR036640 GO:0005524|GO:0016021
Amo12g3390 1349 Gene3D ABC transporter type 1, transmembrane domain 739 1047 IPR036640 GO:0005524|GO:0016021
Amo12g3390 1349 Gene3D ABC transporter type 1, transmembrane domain 1048 1329 IPR036640 GO:0005524|GO:0016021
Amo12g3390 1349 CDD ABC_MTABC3_MDL1_MDL2 1083 1322 - -
Amo12g3390 1349 SUPERFAMILY ABC transporter transmembrane region 92 412 IPR036640 GO:0005524|GO:0016021
Amo12g3390 1349 SMART AAA_5 455 641 IPR003593 -
Amo12g3390 1349 SMART AAA_5 1110 1302 IPR003593 -
Amo12g3390 1349 CDD ABC_MTABC3_MDL1_MDL2 428 667 - -
Amo12g3390 1349 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1083 1319 IPR003439 GO:0005524
Amo12g3390 1349 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 760 1047 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo12g3390 1349 MobiDBLite consensus disorder prediction 21 83 - -
Amo12g3390 1349 CDD ABC_6TM_Pgp_ABCB1_D1_like 104 401 - -
Amo12g3390 1349 Gene3D - 1072 1323 IPR027417 -
Amo12g3390 1349 Gene3D - 418 668 IPR027417 -
Amo12g3390 1349 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 104 1326 IPR039421 -
Amo12g3390 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1074 1322 IPR027417 -
Amo12g3390 1349 MobiDBLite consensus disorder prediction 47 61 - -
Amo12g3390 1349 SUPERFAMILY ABC transporter transmembrane region 747 1067 IPR036640 GO:0005524|GO:0016021
Amo12g3390 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 667 IPR027417 -
Amo12g3390 1349 CDD ABC_6TM_Pgp_ABCB1_D2_like 749 1065 - -
Amo12g3390 1349 Pfam ABC transporter 446 595 IPR003439 GO:0005524
Amo12g3390 1349 Pfam ABC transporter 1102 1250 IPR003439 GO:0005524
Amo12g3390 1349 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 428 664 IPR003439 GO:0005524
Amo12g3390 1349 ProSitePatterns ABC transporters family signature. 567 581 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3390 Amo-Chr12 123056682 123063392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3390 80 1344 Calmodulin-binding Proteins AT2G36910 88.626 0.0 2298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3390 K05658 - gmx:100777382 2296.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3390 12 123056682 123063392 Amo12g3390 12 123056682 123063392 ECH