Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3388 ATGGGGGGTAAATGTCCGCACAGGAGCGTCAAGAAAAGGAGATACTCTCACAAAACCGCACGCCGCACCAAATTCCTCATCAAAGGTGATGACATGGTTTACGATCAGCTAAACAAGGCTGATGAAGAGAGACCTTTACCTGTTGATGAAGATTTGCCTGGGATGGGACAGTACTATTGCCTTCACTGCGATCGGTATTTTTCCAATGTAGCTGTGAGGGATGAGCATTTTAAGACCAAAAAACACAAGAAGCGTGTAAAACAAATGATGGGTCCTGCACCTCATACTCAACTTGATGCTGAACTAGCTGCTGGAATGGGAATGCCAGACAATGGACCAAAGTTGATGTCTATGTAA 357 0.4482 MGGKCPHRSVKKRRYSHKTARRTKFLIKGDDMVYDQLNKADEERPLPVDEDLPGMGQYYCLHCDRYFSNVAVRDEHFKTKKHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3388 118 SUPERFAMILY beta-beta-alpha zinc fingers 45 109 IPR036236 -
Amo12g3388 118 MobiDBLite consensus disorder prediction 1 20 - -
Amo12g3388 118 Pfam Zinc-finger double-stranded RNA-binding 57 83 IPR022755 -
Amo12g3388 118 SMART ZnF_U1_5 55 89 IPR003604 GO:0003676|GO:0008270
Amo12g3388 118 PANTHER EXPRESSED PROTEIN 1 118 - -
Amo12g3388 118 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
Amo12g3388 118 Gene3D Classic Zinc Finger 45 108 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3388 3 117 C2H2 Transcription Factor Family AT2G36930 76.724 1.08e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3388 K14821 - oeu:111404143 227.254