Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3379 CTCAGAAAATCCTCCGGCGCCGGCGCATTATCCACGACTTCATCACGCTCCAACAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGCGTTCGCATGCCGCCGCTCTGTGCCGCCCGGATCTTTCAACTCACACGCGAGCTCGGCCACCGCTCCGACGGCGAAACCATCGAGTGGCTTCTCCGCCACGCTGAGCCATCCATCATCGCCGCAACCGGCACAGGTACCGTCCCTGCCGCCCCGCCGTCTGCATCCGCCACTCCGACGATGGTCTGCGCCGGCGGGAGTCAGTGGCCGAGCCGCCGACTCGACCTCTGCCAGCCTCCTCCAGGAATGGAGTACGCCTCGGTGAACGGTCACCGATACATGCCGTTCACGTCGTTGCTGTTGCAGCCAGCCACGGCGGATGAATCGCAGCACGAGGAGGCTCTCAGCGATCAATGA 447 0.6555 LRKSSGAGALSTTSSRSNKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAPPSASATPTMVCAGGSQWPSRRLDLCQPPPGMEYASVNGHRYMPFTSLLLQPATADESQHEEALSDQ* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3379 148 MobiDBLite consensus disorder prediction 1 16 - -
Amo12g3379 148 Pfam TCP family transcription factor 17 109 IPR017887 -
Amo12g3379 148 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 17 90 - -
Amo12g3379 148 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 90 IPR005333 GO:0003700
Amo12g3379 148 MobiDBLite consensus disorder prediction 1 29 - -
Amo12g3379 148 ProSiteProfiles TCP domain profile. 18 72 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3379 Amo-Chr12 122963019 122963525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3379 19 135 TCP Transcription Factor Family AT2G37000 55.556 7.52e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo12g3379 TCP 7.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3379 - - cam:101510590 187.578